Wall clock time and date at job start Mon Mar 30 2020 02:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00160 * 2 1 4 4 H 1.48499 * 109.47096 * 269.99764 * 3 2 1 5 5 H 1.48496 * 109.47146 * 29.99617 * 3 2 1 6 6 H 1.48506 * 109.47256 * 149.99809 * 3 2 1 7 7 C 1.37880 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00702 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99479 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.52430 * 300.12426 * 9 7 2 11 11 F 1.39892 * 109.47062 * 299.87711 * 10 9 7 12 12 C 1.53117 * 109.52255 * 179.97438 * 9 7 2 13 13 C 1.53044 * 109.27792 * 297.68802 * 12 9 7 14 14 N 1.46847 * 109.51335 * 300.82256 * 13 12 9 15 15 C 1.46830 * 111.21086 * 61.74856 * 14 13 12 16 16 C 1.53038 * 109.51757 * 298.25173 * 15 14 13 17 17 H 0.96996 * 119.99935 * 0.02562 * 1 2 3 18 18 H 1.08996 * 109.46798 * 59.87345 * 10 9 7 19 19 H 1.08997 * 109.47078 * 179.87155 * 10 9 7 20 20 H 1.09001 * 109.50874 * 177.74982 * 12 9 7 21 21 H 1.09000 * 109.50461 * 57.62502 * 12 9 7 22 22 H 1.09002 * 109.46396 * 60.83566 * 13 12 9 23 23 H 1.08994 * 109.46485 * 180.81491 * 13 12 9 24 24 H 1.00904 * 111.00225 * 185.83346 * 14 13 12 25 25 H 1.08995 * 109.46742 * 178.23410 * 15 14 13 26 26 H 1.09004 * 109.45381 * 58.25744 * 15 14 13 27 27 H 1.08997 * 109.50308 * 299.23764 * 16 15 14 28 28 H 1.08996 * 109.53785 * 179.13596 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.3681 -2.5798 1.2475 11 9 1.1695 -2.5075 2.3918 12 6 2.2449 -3.6639 0.0005 13 6 3.0835 -3.6125 -1.2787 14 7 2.1999 -3.6994 -2.4483 15 6 1.2679 -2.5658 -2.4954 16 6 0.3752 -2.5859 -1.2525 17 1 -0.4850 0.8400 -0.0004 18 1 -0.3390 -1.7504 1.2462 19 1 -0.1782 -3.5230 1.2454 20 1 1.7002 -4.6072 0.0409 21 1 2.8996 -3.5836 0.8683 22 1 3.6386 -2.6750 -1.3117 23 1 3.7824 -4.4489 -1.2886 24 1 2.7346 -3.7632 -3.3016 25 1 0.6483 -2.6418 -3.3889 26 1 1.8316 -1.6332 -2.5226 27 1 -0.1990 -3.5121 -1.2318 28 1 -0.3065 -1.7358 -1.2796 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261327270.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:47 Heat of formation + Delta-G solvation = -80.696969 kcal Electronic energy + Delta-G solvation = -12452.973417 eV Core-core repulsion = 10223.746001 eV Total energy + Delta-G solvation = -2229.227416 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.107 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.05244 -39.55122 -35.21288 -32.82936 -31.31326 -27.34356 -27.12676 -23.58607 -22.51940 -20.48001 -17.71108 -17.35889 -16.81317 -16.20926 -15.95979 -15.47961 -15.26105 -14.50047 -14.40383 -13.75314 -13.20278 -12.88442 -12.70214 -12.61639 -12.46605 -12.07104 -11.75966 -11.59270 -10.94861 -10.79422 -10.57487 -10.33678 -9.18391 -8.04031 -6.16063 1.37748 1.41772 1.49094 2.43094 3.19400 3.55700 4.20446 4.31347 4.38542 4.47978 4.62714 4.78625 4.87994 4.90276 5.08253 5.21482 5.26065 5.32028 5.44336 5.56238 5.69088 5.71250 6.03760 6.35891 6.43271 6.76358 6.84407 7.49355 8.95336 Molecular weight = 187.11amu Principal moments of inertia in cm(-1) A = 0.034412 B = 0.020027 C = 0.016253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.475526 B = 1397.792680 C = 1722.311989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.025 3.975 3 Si 0.939 3.061 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.501 4.501 8 H 0.043 0.957 9 C 0.034 3.966 10 C 0.066 3.934 11 F -0.243 7.243 12 C -0.100 4.100 13 C 0.073 3.927 14 N -0.686 5.686 15 C 0.079 3.921 16 C -0.095 4.095 17 H 0.261 0.739 18 H 0.078 0.922 19 H 0.048 0.952 20 H 0.052 0.948 21 H 0.044 0.956 22 H 0.018 0.982 23 H 0.080 0.920 24 H 0.344 0.656 25 H 0.068 0.932 26 H 0.015 0.985 27 H 0.034 0.966 28 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.178 -4.278 -3.383 5.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.174 4.174 3 Si 0.766 3.234 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.033 3.967 10 C 0.011 3.989 11 F -0.224 7.224 12 C -0.138 4.138 13 C -0.056 4.056 14 N -0.318 5.318 15 C -0.051 4.051 16 C -0.134 4.134 17 H 0.070 0.930 18 H 0.096 0.904 19 H 0.067 0.933 20 H 0.070 0.930 21 H 0.063 0.937 22 H 0.037 0.963 23 H 0.099 0.901 24 H 0.161 0.839 25 H 0.087 0.913 26 H 0.033 0.967 27 H 0.053 0.947 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.600 -4.554 -3.040 5.705 hybrid contribution 0.932 1.846 0.011 2.068 sum 2.532 -2.708 -3.029 4.788 Atomic orbital electron populations 1.69810 1.06415 1.26830 1.51610 1.25454 0.95595 1.01303 0.95035 0.85842 0.78789 0.80762 0.77960 1.20256 1.21120 1.20344 1.21160 0.92278 0.91019 1.49428 0.93877 1.18795 0.92992 0.93516 0.91418 1.22222 0.93257 1.00868 0.82585 1.92564 1.77609 1.98053 1.54210 1.21516 0.98096 0.97606 0.96534 1.21733 0.94001 0.99217 0.90697 1.60375 1.21584 1.44388 1.05447 1.21646 0.94618 0.90981 0.97816 1.21371 0.97901 0.99582 0.94515 0.92953 0.90404 0.93344 0.92962 0.93679 0.96336 0.90147 0.83870 0.91339 0.96652 0.94698 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.73 9.36 21.45 0.20 -48.53 15 2 C 0.02 1.31 5.15 84.66 0.44 1.75 15 3 Si 0.94 43.08 29.54 68.60 2.03 45.11 15 4 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 5 H -0.29 -12.98 7.11 99.48 0.71 -12.28 15 6 H -0.28 -12.82 7.11 99.48 0.71 -12.12 15 7 C -0.50 -26.31 5.94 25.60 0.15 -26.16 15 8 H 0.04 2.33 6.87 -2.91 -0.02 2.31 15 9 C 0.03 1.59 0.36 -52.84 -0.02 1.57 15 10 C 0.07 3.17 6.15 71.98 0.44 3.61 15 11 F -0.24 -12.30 16.61 44.97 0.75 -11.56 15 12 C -0.10 -4.18 4.69 30.65 0.14 -4.03 15 13 C 0.07 2.69 6.34 86.33 0.55 3.24 15 14 N -0.69 -24.04 6.84 -514.04 -3.52 -27.56 15 15 C 0.08 3.13 6.34 86.33 0.55 3.68 15 16 C -0.10 -4.28 4.70 30.65 0.14 -4.14 15 17 H 0.26 13.55 8.31 -92.71 -0.77 12.78 15 18 H 0.08 4.09 6.06 -2.39 -0.01 4.07 15 19 H 0.05 2.07 8.14 -2.39 -0.02 2.05 15 20 H 0.05 2.07 8.14 -2.39 -0.02 2.05 15 21 H 0.04 1.94 7.88 -2.39 -0.02 1.92 15 22 H 0.02 0.75 6.78 -2.39 -0.02 0.73 15 23 H 0.08 2.49 8.14 -2.39 -0.02 2.47 15 24 H 0.34 9.92 8.90 -89.69 -0.80 9.12 15 25 H 0.07 2.42 8.14 -2.39 -0.02 2.40 15 26 H 0.02 0.68 7.31 -2.38 -0.02 0.66 15 27 H 0.03 1.47 8.14 -2.39 -0.02 1.45 15 28 H 0.07 3.58 6.05 -2.39 -0.01 3.57 15 Total: -1.00 -55.67 222.20 2.20 -53.46 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.35 Total: 9.55 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 2.39 Total: -20.47 kcal Atomic # 7 Polarization: -72.78 SS G_CDS: -3.32 Total: -76.10 kcal Atomic # 9 Polarization: -12.30 SS G_CDS: 0.75 Total: -11.56 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -55.67 2.20 -53.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261327270.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.234 kcal (2) G-P(sol) polarization free energy of solvation -55.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds