Wall clock time and date at job start Mon Mar 30 2020 02:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99886 * 2 1 4 4 H 1.48503 * 109.46945 * 269.99625 * 3 2 1 5 5 H 1.48499 * 109.47326 * 29.99506 * 3 2 1 6 6 H 1.48499 * 109.47452 * 149.99638 * 3 2 1 7 7 C 1.38811 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99836 * 160.42487 * 7 2 1 9 9 N 1.36941 * 119.99944 * 340.43232 * 7 2 1 10 10 C 1.50167 * 120.53818 * 336.70842 * 9 7 2 11 11 C 1.46234 * 107.58702 * 109.60240 * 10 9 7 12 12 C 1.52530 * 114.27763 * 58.38094 * 11 10 9 13 13 C 1.50129 * 105.40930 * 270.59118 * 12 11 10 14 14 H 1.08999 * 109.20720 * 337.33304 * 13 12 11 15 15 F 1.39901 * 109.20503 * 218.02695 * 13 12 11 16 16 C 1.54843 * 110.81812 * 97.68523 * 13 12 11 17 17 C 1.43408 * 120.51745 * 156.60402 * 9 7 2 18 18 H 0.96994 * 119.99906 * 0.02562 * 1 2 3 19 19 H 1.09005 * 109.84315 * 350.06210 * 10 9 7 20 20 H 1.08998 * 109.84364 * 229.15036 * 10 9 7 21 21 H 1.09008 * 108.52074 * 179.61720 * 11 10 9 22 22 H 1.08993 * 108.52569 * 297.28742 * 11 10 9 23 23 H 1.08996 * 110.24588 * 29.55656 * 12 11 10 24 24 H 1.08996 * 110.25362 * 151.61687 * 12 11 10 25 25 H 1.08994 * 109.36218 * 81.33353 * 16 13 12 26 26 H 1.09000 * 109.35375 * 201.06174 * 16 13 12 27 27 H 1.08991 * 108.12352 * 149.82821 * 17 9 7 28 28 H 1.08997 * 107.97295 * 33.16921 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0435 -1.2292 -0.3128 9 7 1.3850 -2.3536 0.3983 10 6 0.1857 -2.2982 1.3004 11 6 -0.9813 -2.6841 0.5082 12 6 -0.8835 -4.0715 -0.1178 13 6 -0.2339 -3.8611 -1.4549 14 1 -0.3857 -2.8283 -1.7687 15 9 -0.8222 -4.7170 -2.3921 16 6 1.2849 -4.1532 -1.3809 17 6 1.8637 -3.6317 -0.0421 18 1 -0.4850 0.8400 -0.0004 19 1 0.0559 -1.2852 1.6814 20 1 0.3152 -2.9921 2.1310 21 1 -1.8611 -2.6556 1.1512 22 1 -1.1141 -1.9547 -0.2908 23 1 -0.2675 -4.7226 0.5025 24 1 -1.8780 -4.4992 -0.2447 25 1 1.4499 -5.2283 -1.4516 26 1 1.7893 -3.6550 -2.2088 27 1 1.6385 -4.3637 0.7334 28 1 2.9473 -3.5687 -0.1421 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261333766.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:17 Heat of formation + Delta-G solvation = -48.832349 kcal Electronic energy + Delta-G solvation = -12344.697123 eV Core-core repulsion = 10116.851460 eV Total energy + Delta-G solvation = -2227.845663 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.107 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.52813 -39.27926 -34.93099 -33.38349 -32.14057 -27.99482 -25.85150 -24.69553 -21.78950 -20.83504 -18.66461 -17.12117 -16.92450 -16.53721 -16.03886 -15.40875 -15.12558 -14.51565 -14.02471 -13.84506 -13.23450 -13.17553 -12.91505 -12.64538 -12.30274 -11.98215 -11.84733 -11.52101 -11.30910 -11.17151 -11.01786 -10.43831 -8.68739 -7.83732 -5.25046 1.47783 1.51148 1.59240 2.54560 3.29726 3.54893 3.77360 3.93335 3.96356 4.22033 4.50619 4.58135 4.66636 4.84279 4.88697 5.07936 5.13954 5.25457 5.27416 5.44218 5.52058 5.67331 5.72424 6.12827 6.41998 7.17562 7.90270 8.39874 9.20938 Molecular weight = 187.11amu Principal moments of inertia in cm(-1) A = 0.053126 B = 0.013973 C = 0.013470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.920588 B = 2003.430421 C = 2078.199353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.043 4.043 3 Si 0.958 3.042 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.264 4.264 8 H 0.064 0.936 9 N -0.605 5.605 10 C 0.165 3.835 11 C -0.124 4.124 12 C -0.129 4.129 13 C 0.100 3.900 14 H 0.055 0.945 15 F -0.238 7.238 16 C -0.160 4.160 17 C 0.155 3.845 18 H 0.248 0.752 19 H 0.060 0.940 20 H 0.031 0.969 21 H 0.048 0.952 22 H 0.066 0.934 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.018 -6.506 0.935 6.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.239 4.239 3 Si 0.788 3.212 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.394 4.394 8 H 0.082 0.918 9 N -0.327 5.327 10 C 0.042 3.958 11 C -0.162 4.162 12 C -0.166 4.166 13 C 0.063 3.937 14 H 0.073 0.927 15 F -0.219 7.219 16 C -0.201 4.201 17 C 0.027 3.973 18 H 0.057 0.943 19 H 0.078 0.922 20 H 0.049 0.951 21 H 0.066 0.934 22 H 0.085 0.915 23 H 0.102 0.898 24 H 0.096 0.904 25 H 0.105 0.895 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.116 -6.374 0.944 6.444 hybrid contribution 0.211 1.159 -0.398 1.243 sum 0.096 -5.215 0.546 5.244 Atomic orbital electron populations 1.70115 1.05993 1.25377 1.54965 1.25545 0.96012 1.00770 1.01589 0.85424 0.78204 0.80435 0.77178 1.21787 1.21962 1.20040 1.19441 0.93791 0.86623 1.39527 0.91797 1.44492 1.34093 1.01492 1.52637 1.20131 0.85527 0.99498 0.90635 1.20742 0.98613 0.95441 1.01440 1.21585 1.00960 0.98699 0.95372 1.21713 0.93694 0.91215 0.87032 0.92680 1.92722 1.86136 1.73833 1.69181 1.23426 0.93499 1.01473 1.01719 1.20479 0.96605 0.87389 0.92871 0.94251 0.92156 0.95112 0.93383 0.91536 0.89797 0.90365 0.89527 0.93367 0.92693 0.94211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.91 9.43 21.65 0.20 -50.70 15 2 C -0.04 -2.32 4.91 84.86 0.42 -1.90 15 3 Si 0.96 43.96 29.60 68.60 2.03 45.99 15 4 H -0.29 -13.34 7.11 99.48 0.71 -12.64 15 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 15 6 H -0.28 -12.27 7.11 99.48 0.71 -11.56 15 7 C -0.26 -14.00 9.62 84.03 0.81 -13.19 15 8 H 0.06 3.37 7.88 -2.91 -0.02 3.35 15 9 N -0.61 -28.83 2.61 -707.91 -1.85 -30.67 15 10 C 0.17 7.46 5.24 83.58 0.44 7.90 15 11 C -0.12 -5.17 5.02 28.36 0.14 -5.03 15 12 C -0.13 -4.62 5.53 29.51 0.16 -4.45 15 13 C 0.10 3.95 3.63 30.30 0.11 4.06 15 14 H 0.06 2.61 6.82 -2.39 -0.02 2.59 15 15 F -0.24 -9.25 16.99 44.97 0.76 -8.49 15 16 C -0.16 -5.92 6.15 31.87 0.20 -5.72 15 17 C 0.15 6.12 5.17 87.60 0.45 6.57 15 18 H 0.25 13.51 8.31 -92.71 -0.77 12.74 15 19 H 0.06 3.10 6.05 -2.38 -0.01 3.09 15 20 H 0.03 1.24 8.13 -2.39 -0.02 1.22 15 21 H 0.05 1.83 8.14 -2.38 -0.02 1.81 15 22 H 0.07 3.31 5.29 -2.39 -0.01 3.30 15 23 H 0.08 2.75 6.29 -2.39 -0.02 2.73 15 24 H 0.08 2.54 8.05 -2.39 -0.02 2.53 15 25 H 0.09 2.70 8.14 -2.39 -0.02 2.68 15 26 H 0.05 1.88 8.14 -2.39 -0.02 1.86 15 27 H 0.05 1.92 6.89 -2.39 -0.02 1.90 15 28 H 0.04 1.55 7.98 -2.39 -0.02 1.53 15 Total: -1.00 -56.33 221.33 5.02 -51.31 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: 1.14 Total: 4.33 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 2.73 Total: -11.77 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -1.64 Total: -81.37 kcal Atomic # 9 Polarization: -9.25 SS G_CDS: 0.76 Total: -8.49 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -56.33 5.02 -51.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261333766.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.482 kcal (2) G-P(sol) polarization free energy of solvation -56.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds