Wall clock time and date at job start Mon Mar 30 2020 02:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46842 * 2 1 4 4 C 1.50701 * 109.47063 * 119.99533 * 2 1 3 5 5 H 1.08005 * 119.99926 * 120.00297 * 4 2 1 6 6 C 1.37875 * 120.00138 * 300.00451 * 4 2 1 7 7 N 1.31518 * 119.99955 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99907 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47356 * 90.00236 * 8 6 4 10 10 H 1.48500 * 109.47051 * 209.99886 * 8 6 4 11 11 H 1.48494 * 109.47211 * 329.99659 * 8 6 4 12 12 N 1.46900 * 109.47377 * 239.99832 * 2 1 3 13 13 C 1.48135 * 111.00004 * 184.58754 * 12 2 1 14 14 C 1.55444 * 103.14094 * 144.25839 * 13 12 2 15 15 H 1.09005 * 111.07287 * 82.88510 * 14 13 12 16 16 O 1.42900 * 111.19791 * 206.99477 * 14 13 12 17 17 C 1.54965 * 101.11656 * 324.96706 * 14 13 12 18 18 O 1.43879 * 104.36656 * 35.97427 * 17 14 13 19 19 H 1.09000 * 109.47582 * 300.00291 * 1 2 3 20 20 H 1.08997 * 109.46978 * 60.00575 * 1 2 3 21 21 H 1.09002 * 109.46842 * 180.02562 * 1 2 3 22 22 H 0.97001 * 119.99612 * 180.02562 * 7 6 4 23 23 H 1.09000 * 110.68740 * 262.66698 * 13 12 2 24 24 H 1.09007 * 110.68529 * 25.85493 * 13 12 2 25 25 H 0.96702 * 113.99803 * 173.23060 * 16 14 13 26 26 H 1.09002 * 110.47529 * 277.21664 * 17 14 13 27 27 H 1.09004 * 110.47671 * 154.73101 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1371 -0.8595 3.5566 8 14 0.6257 1.2799 2.6540 9 1 -0.8022 0.8746 2.6992 10 1 0.9769 1.9954 3.9070 11 1 0.8491 2.1773 1.4923 12 7 2.0197 -0.6925 -1.1994 13 6 3.4964 -0.8088 -1.1795 14 6 3.7506 -2.1950 -1.8353 15 1 3.7372 -2.1224 -2.9229 16 8 4.9770 -2.7668 -1.3760 17 6 2.5321 -2.9992 -1.3159 18 8 1.4569 -2.0434 -1.2928 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.9024 -0.5282 4.4376 23 1 3.9531 -0.0143 -1.7696 24 1 3.8701 -0.7931 -0.1557 25 1 5.1255 -3.6735 -1.6777 26 1 2.7257 -3.3795 -0.3129 27 1 2.2987 -3.8192 -1.9951 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306301874.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:37 Heat of formation + Delta-G solvation = -32.819654 kcal Electronic energy + Delta-G solvation = -12229.734642 eV Core-core repulsion = 9990.210552 eV Total energy + Delta-G solvation = -2239.524090 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.64295 -35.94910 -34.00754 -31.74566 -30.35370 -27.96715 -25.06189 -23.50988 -21.09714 -19.98800 -17.47621 -16.89448 -15.72904 -15.09700 -14.52918 -14.10450 -13.74749 -13.13819 -12.81869 -12.30012 -12.08520 -11.96640 -11.47906 -10.98143 -10.73561 -10.37411 -10.27021 -10.01466 -9.70667 -9.53896 -9.10709 -8.62735 -7.71385 -6.15136 -4.16830 3.24948 3.33527 3.36340 3.78063 4.21442 4.34329 5.01198 5.13652 5.18643 5.35237 5.61942 5.97516 6.14840 6.28198 6.39088 6.49054 6.54506 6.61774 6.89950 7.20006 7.36304 7.72409 7.77013 7.81547 8.35599 8.83564 9.45273 10.97472 Molecular weight = 187.10amu Principal moments of inertia in cm(-1) A = 0.052060 B = 0.014532 C = 0.012899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.709364 B = 1926.267839 C = 2170.130378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.142 3.858 3 H 0.057 0.943 4 C -0.543 4.543 5 H 0.078 0.922 6 C 0.074 3.926 7 N -0.894 5.894 8 Si 0.892 3.108 9 H -0.277 1.277 10 H -0.297 1.297 11 H -0.266 1.266 12 N -0.314 5.314 13 C 0.002 3.998 14 C 0.077 3.923 15 H 0.073 0.927 16 O -0.555 6.555 17 C 0.002 3.998 18 O -0.233 6.233 19 H 0.040 0.960 20 H 0.036 0.964 21 H 0.060 0.940 22 H 0.265 0.735 23 H 0.095 0.905 24 H 0.097 0.903 25 H 0.376 0.624 26 H 0.067 0.933 27 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.523 -1.374 -9.186 9.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.034 3.966 3 H 0.075 0.925 4 C -0.582 4.582 5 H 0.096 0.904 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.722 3.278 9 H -0.204 1.204 10 H -0.224 1.224 11 H -0.191 1.191 12 N -0.082 5.082 13 C -0.126 4.126 14 C 0.016 3.984 15 H 0.091 0.909 16 O -0.360 6.360 17 C -0.078 4.078 18 O -0.237 6.237 19 H 0.059 0.941 20 H 0.056 0.944 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.113 0.887 24 H 0.115 0.885 25 H 0.223 0.777 26 H 0.085 0.915 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.169 -0.563 -9.142 9.233 hybrid contribution -0.177 -0.290 0.855 0.920 sum 0.992 -0.854 -8.287 8.390 Atomic orbital electron populations 1.21940 0.97277 1.01598 0.98448 1.20380 0.93272 0.94729 0.88229 0.92513 1.21428 1.33099 1.14168 0.89457 0.90373 1.24977 0.95425 0.96761 0.95724 1.69911 1.45070 1.40174 0.97998 0.86785 0.80692 0.83346 0.76964 1.20387 1.22432 1.19064 1.70800 1.04065 0.95335 1.37977 1.23819 0.90178 0.95020 1.03604 1.23731 0.83634 0.93553 0.97472 0.90922 1.86540 1.39192 1.32831 1.77402 1.24157 0.89132 0.93345 1.01137 1.91568 1.24885 1.11305 1.95940 0.94136 0.94449 0.92131 0.92523 0.88680 0.88455 0.77715 0.91496 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.65 37.16 0.32 -2.81 15 2 C 0.14 3.48 2.16 -68.86 -0.15 3.33 15 3 H 0.06 1.39 7.20 -51.93 -0.37 1.01 15 4 C -0.54 -15.29 7.69 -34.44 -0.26 -15.56 15 5 H 0.08 2.40 6.45 -52.48 -0.34 2.06 15 6 C 0.07 2.15 5.45 -17.82 -0.10 2.05 15 7 N -0.89 -27.36 13.96 55.43 0.77 -26.58 15 8 Si 0.89 22.01 24.37 -169.99 -4.14 17.86 15 9 H -0.28 -6.71 6.87 56.52 0.39 -6.32 15 10 H -0.30 -7.30 7.11 56.52 0.40 -6.90 15 11 H -0.27 -6.23 6.53 56.52 0.37 -5.86 15 12 N -0.31 -6.94 5.85 -105.61 -0.62 -7.56 15 13 C 0.00 0.05 6.24 -1.84 -0.01 0.04 15 14 C 0.08 1.28 4.56 -24.40 -0.11 1.17 15 15 H 0.07 1.05 8.14 -51.93 -0.42 0.62 15 16 O -0.56 -8.74 13.49 -35.23 -0.48 -9.22 15 17 C 0.00 0.03 7.35 38.20 0.28 0.31 15 18 O -0.23 -5.18 10.61 -14.11 -0.15 -5.33 15 19 H 0.04 0.95 3.27 -51.93 -0.17 0.78 15 20 H 0.04 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.06 1.44 7.52 -51.93 -0.39 1.05 15 22 H 0.26 7.60 8.31 -40.82 -0.34 7.26 15 23 H 0.10 1.65 8.14 -51.93 -0.42 1.23 15 24 H 0.10 2.26 6.02 -51.93 -0.31 1.95 15 25 H 0.38 3.86 9.11 45.56 0.42 4.28 15 26 H 0.07 1.36 7.81 -51.93 -0.41 0.96 15 27 H 0.08 1.16 8.14 -51.93 -0.42 0.73 15 LS Contribution 219.14 15.07 3.30 3.30 Total: -1.00 -32.00 219.14 -3.79 -35.79 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -2.45 Total: 3.20 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -0.03 Total: -11.47 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.16 Total: -34.14 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.62 Total: -14.55 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.86 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -32.00 -3.79 -35.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306301874.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.974 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds