Wall clock time and date at job start Mon Mar 30 2020 02:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 N 1.35499 * 179.97438 * 2 1 4 4 C 1.39853 * 120.00125 * 339.49308 * 3 2 1 5 5 C 1.39309 * 119.95351 * 359.97438 * 4 3 2 6 6 C 1.38486 * 120.42960 * 180.02562 * 5 4 3 7 7 C 1.37681 * 120.32052 * 359.97438 * 6 5 4 8 8 C 1.40747 * 119.89479 * 359.97438 * 7 6 5 9 9 C 1.41408 * 120.21382 * 180.02562 * 8 7 6 10 10 H 1.07994 * 119.99553 * 24.38836 * 9 8 7 11 11 C 1.39934 * 120.00079 * 204.38416 * 9 8 7 12 12 N 1.30829 * 119.99652 * 17.83818 * 11 9 8 13 13 Si 1.86801 * 119.99734 * 197.83990 * 11 9 8 14 14 H 1.48497 * 109.47324 * 60.00052 * 13 11 9 15 15 H 1.48505 * 109.46676 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46817 * 299.99768 * 13 11 9 17 17 C 1.38262 * 119.94824 * 180.02562 * 4 3 2 18 18 H 0.97006 * 119.99272 * 159.48819 * 3 2 1 19 19 H 1.08004 * 119.78426 * 0.02783 * 5 4 3 20 20 H 1.07997 * 119.83899 * 180.02562 * 6 5 4 21 21 H 1.08001 * 120.05786 * 179.97438 * 7 6 5 22 22 H 0.96997 * 119.99517 * 179.97438 * 12 11 9 23 23 H 1.08002 * 120.16079 * 359.69670 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 7 2.4911 0.0006 0.0000 4 6 3.1909 -1.1335 0.4243 5 6 2.4939 -2.2631 0.8472 6 6 3.1769 -3.3912 1.2699 7 6 4.5535 -3.4087 1.2761 8 6 5.2714 -2.2753 0.8506 9 6 6.6854 -2.2861 0.8537 10 1 7.2183 -3.2234 0.7924 11 6 7.3941 -1.0823 0.9361 12 7 6.7944 0.0024 1.3549 13 14 9.1963 -1.0242 0.4481 14 1 9.3373 -1.4268 -0.9743 15 1 9.7129 0.3567 0.6258 16 1 9.9716 -1.9564 1.3056 17 6 4.5735 -1.1315 0.4243 18 1 2.9756 0.7877 -0.2944 19 1 1.4139 -2.2590 0.8455 20 1 2.6269 -4.2618 1.5954 21 1 5.0819 -4.2907 1.6070 22 1 7.2858 0.8367 1.4123 23 1 5.1149 -0.2577 0.0928 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306354953.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:20 Heat of formation + Delta-G solvation = 47.331157 kcal Electronic energy + Delta-G solvation = -10454.095936 eV Core-core repulsion = 8459.930455 eV Total energy + Delta-G solvation = -1994.165481 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 188.064 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.42575 -36.29967 -34.16250 -33.25408 -29.68382 -28.26786 -25.40769 -21.54854 -21.21195 -18.84361 -17.31355 -16.15767 -14.96040 -14.76418 -14.07461 -13.48851 -13.11754 -12.79467 -12.50502 -11.89980 -11.74787 -11.35524 -11.17192 -10.81248 -10.61309 -9.93348 -9.74848 -9.61863 -9.12759 -7.55436 -6.98307 -6.74429 -4.49888 2.64295 2.82579 3.01646 3.03875 3.08060 3.14050 3.38223 3.72200 3.85633 4.53929 5.57520 5.90375 6.34593 6.38887 6.74729 6.89188 6.94709 7.12282 7.28368 7.62032 7.78719 7.89574 7.94553 8.17998 8.47420 8.63625 8.77817 8.82264 10.07108 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.054851 B = 0.010926 C = 0.009339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.347699 B = 2562.018051 C = 2997.610760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.427 3.573 3 N -0.613 5.613 4 C 0.181 3.819 5 C -0.282 4.282 6 C -0.064 4.064 7 C -0.240 4.240 8 C 0.135 3.865 9 C -0.459 4.459 10 H 0.081 0.919 11 C 0.077 3.923 12 N -0.790 5.790 13 Si 0.909 3.091 14 H -0.263 1.263 15 H -0.278 1.278 16 H -0.265 1.265 17 C -0.201 4.201 18 H 0.424 0.576 19 H 0.089 0.911 20 H 0.094 0.906 21 H 0.095 0.905 22 H 0.282 0.718 23 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.274 0.781 -1.896 2.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.162 5.162 2 C 0.023 3.977 3 N -0.250 5.250 4 C 0.087 3.913 5 C -0.304 4.304 6 C -0.083 4.083 7 C -0.260 4.260 8 C 0.131 3.869 9 C -0.488 4.488 10 H 0.099 0.901 11 C -0.141 4.141 12 N -0.415 5.415 13 Si 0.733 3.267 14 H -0.187 1.187 15 H -0.203 1.203 16 H -0.189 1.189 17 C -0.224 4.224 18 H 0.264 0.736 19 H 0.108 0.892 20 H 0.112 0.888 21 H 0.114 0.886 22 H 0.093 0.907 23 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.370 0.954 -1.798 2.069 hybrid contribution 1.525 0.470 -0.209 1.609 sum 1.154 1.424 -2.007 2.718 Atomic orbital electron populations 1.81836 1.06058 1.08046 1.20237 1.23660 0.86972 0.95161 0.91948 1.39901 0.96622 1.17802 1.70631 1.17623 0.91315 0.84562 0.97812 1.19978 0.97047 0.95151 1.18225 1.20316 0.94278 0.95725 0.98009 1.20992 0.93047 1.00287 1.11654 1.17320 0.93084 0.89934 0.86531 1.19565 0.91202 0.93595 1.44441 0.90114 1.25927 1.01030 0.95082 0.92089 1.69812 1.38840 1.01158 1.31667 0.86350 0.81760 0.78157 0.80403 1.18742 1.20330 1.18944 1.20768 0.88886 1.02156 1.10601 0.73590 0.89241 0.88833 0.88636 0.90704 0.85614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -9.03 18.54 41.27 0.77 -8.27 14 2 C 0.43 7.94 14.99 -102.19 -1.53 6.41 14 3 N -0.61 -11.14 5.44 20.55 0.11 -11.02 14 4 C 0.18 3.94 6.61 -83.79 -0.55 3.39 14 5 C -0.28 -6.25 9.31 -39.09 -0.36 -6.62 14 6 C -0.06 -1.41 10.02 -39.69 -0.40 -1.81 14 7 C -0.24 -5.59 9.79 -38.84 -0.38 -5.97 14 8 C 0.13 3.36 5.58 -106.85 -0.60 2.77 14 9 C -0.46 -11.38 9.05 -37.74 -0.34 -11.72 14 10 H 0.08 1.92 7.91 -52.49 -0.41 1.51 14 11 C 0.08 1.80 5.14 -17.34 -0.09 1.71 14 12 N -0.79 -18.85 10.95 55.55 0.61 -18.24 14 13 Si 0.91 17.46 29.60 -169.99 -5.03 12.43 14 14 H -0.26 -5.03 7.11 56.52 0.40 -4.63 14 15 H -0.28 -5.23 7.11 56.52 0.40 -4.82 14 16 H -0.26 -5.07 7.11 56.52 0.40 -4.67 14 17 C -0.20 -4.76 8.53 -38.68 -0.33 -5.09 14 18 H 0.42 6.40 8.82 -40.82 -0.36 6.04 14 19 H 0.09 1.93 6.99 -52.48 -0.37 1.56 14 20 H 0.09 1.78 8.06 -52.49 -0.42 1.36 14 21 H 0.10 2.09 8.06 -52.49 -0.42 1.66 14 22 H 0.28 6.13 8.30 -40.82 -0.34 5.79 14 23 H 0.13 2.98 6.16 -52.49 -0.32 2.65 14 LS Contribution 219.14 15.07 3.30 3.30 Total: -1.00 -26.01 219.14 -6.27 -32.28 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -1.44 Total: 6.46 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -4.58 Total: -16.94 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 1.49 Total: -37.53 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -26.01 -6.27 -32.28 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306354953.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.610 kcal (2) G-P(sol) polarization free energy of solvation -26.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds