Wall clock time and date at job start Mon Mar 30 2020 02:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 N 1.35499 * 179.97438 * 2 1 4 4 C 1.39853 * 120.00125 * 339.49308 * 3 2 1 5 5 C 1.39309 * 119.95351 * 359.97438 * 4 3 2 6 6 C 1.38486 * 120.42960 * 180.02562 * 5 4 3 7 7 C 1.37681 * 120.32052 * 359.97438 * 6 5 4 8 8 C 1.40747 * 119.89479 * 359.97438 * 7 6 5 9 9 C 1.41408 * 120.21382 * 180.02562 * 8 7 6 10 10 H 1.07994 * 119.99553 * 24.38836 * 9 8 7 11 11 C 1.39934 * 120.00079 * 204.38416 * 9 8 7 12 12 N 1.30829 * 119.99652 * 17.83818 * 11 9 8 13 13 Si 1.86801 * 119.99734 * 197.83990 * 11 9 8 14 14 H 1.48497 * 109.47324 * 60.00052 * 13 11 9 15 15 H 1.48505 * 109.46676 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46817 * 299.99768 * 13 11 9 17 17 C 1.38262 * 119.94824 * 180.02562 * 4 3 2 18 18 H 0.97006 * 119.99272 * 159.48819 * 3 2 1 19 19 H 1.08004 * 119.78426 * 0.02783 * 5 4 3 20 20 H 1.07997 * 119.83899 * 180.02562 * 6 5 4 21 21 H 1.08001 * 120.05786 * 179.97438 * 7 6 5 22 22 H 0.96997 * 119.99517 * 179.97438 * 12 11 9 23 23 H 1.08002 * 120.16079 * 359.69670 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 7 2.4911 0.0006 0.0000 4 6 3.1909 -1.1335 0.4243 5 6 2.4939 -2.2631 0.8472 6 6 3.1769 -3.3912 1.2699 7 6 4.5535 -3.4087 1.2761 8 6 5.2714 -2.2753 0.8506 9 6 6.6854 -2.2861 0.8537 10 1 7.2183 -3.2234 0.7924 11 6 7.3941 -1.0823 0.9361 12 7 6.7944 0.0024 1.3549 13 14 9.1963 -1.0242 0.4481 14 1 9.3373 -1.4268 -0.9743 15 1 9.7129 0.3567 0.6258 16 1 9.9716 -1.9564 1.3056 17 6 4.5735 -1.1315 0.4243 18 1 2.9756 0.7877 -0.2944 19 1 1.4139 -2.2590 0.8455 20 1 2.6269 -4.2618 1.5954 21 1 5.0819 -4.2907 1.6070 22 1 7.2858 0.8367 1.4123 23 1 5.1149 -0.2577 0.0928 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306354953.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:20 Heat of formation + Delta-G solvation = 35.879469 kcal Electronic energy + Delta-G solvation = -10454.592519 eV Core-core repulsion = 8459.930455 eV Total energy + Delta-G solvation = -1994.662064 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 188.064 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.11415 -37.93178 -35.83349 -34.94374 -31.46977 -29.98616 -27.20626 -23.27624 -22.93218 -20.49940 -18.98607 -17.91822 -16.61385 -16.50544 -15.62865 -15.19453 -14.76819 -14.40196 -14.19452 -13.57560 -13.39084 -13.01095 -12.77156 -12.56171 -12.17003 -11.69879 -11.48634 -11.29090 -10.83741 -9.36536 -8.71340 -8.45927 -6.34764 0.91422 1.08365 1.45950 1.49594 1.54790 1.58899 1.90398 2.16280 2.25875 2.78501 3.75846 4.26873 4.58979 4.71236 5.01193 5.14734 5.19990 5.37861 5.58144 5.84436 6.02561 6.11356 6.28786 6.45225 6.70353 6.96672 7.01286 7.08566 8.34624 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.054851 B = 0.010926 C = 0.009339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.347699 B = 2562.018051 C = 2997.610760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.437 3.563 3 N -0.601 5.601 4 C 0.188 3.812 5 C -0.293 4.293 6 C -0.062 4.062 7 C -0.259 4.259 8 C 0.107 3.893 9 C -0.492 4.492 10 H 0.079 0.921 11 C 0.041 3.959 12 N -0.814 5.814 13 Si 0.979 3.021 14 H -0.261 1.261 15 H -0.269 1.269 16 H -0.263 1.263 17 C -0.217 4.217 18 H 0.438 0.562 19 H 0.098 0.902 20 H 0.123 0.877 21 H 0.102 0.898 22 H 0.290 0.710 23 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.516 1.012 -2.109 2.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C 0.032 3.968 3 N -0.239 5.239 4 C 0.093 3.907 5 C -0.315 4.315 6 C -0.081 4.081 7 C -0.279 4.279 8 C 0.104 3.896 9 C -0.521 4.521 10 H 0.097 0.903 11 C -0.175 4.175 12 N -0.439 5.439 13 Si 0.800 3.200 14 H -0.185 1.185 15 H -0.193 1.193 16 H -0.187 1.187 17 C -0.241 4.241 18 H 0.281 0.719 19 H 0.116 0.884 20 H 0.141 0.859 21 H 0.120 0.880 22 H 0.101 0.899 23 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.150 1.204 -2.015 2.353 hybrid contribution 1.358 0.392 -0.121 1.418 sum 1.207 1.596 -2.136 2.927 Atomic orbital electron populations 1.81853 1.06304 1.08348 1.20449 1.23518 0.86799 0.94816 0.91632 1.39717 0.96499 1.17505 1.70145 1.17594 0.90954 0.85389 0.96795 1.20208 0.97525 0.95427 1.18323 1.20629 0.93917 0.96653 0.96864 1.21173 0.93898 1.00356 1.12457 1.17705 0.93792 0.91009 0.87132 1.19823 0.91699 0.94413 1.46178 0.90265 1.26680 1.05140 0.94305 0.91401 1.69841 1.40641 1.01771 1.31670 0.85287 0.76359 0.78465 0.79848 1.18541 1.19293 1.18724 1.20721 0.89647 1.01923 1.11772 0.71869 0.88431 0.85945 0.87963 0.89876 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -17.49 18.54 17.21 0.32 -17.17 14 2 C 0.44 15.43 14.99 184.39 2.76 18.20 14 3 N -0.60 -20.93 5.44 -88.88 -0.48 -21.42 14 4 C 0.19 8.02 6.61 38.12 0.25 8.27 14 5 C -0.29 -12.56 9.31 22.59 0.21 -12.35 14 6 C -0.06 -2.63 10.02 22.20 0.22 -2.41 14 7 C -0.26 -12.02 9.79 22.75 0.22 -11.80 14 8 C 0.11 5.38 5.58 -21.31 -0.12 5.26 14 9 C -0.49 -24.64 9.05 23.46 0.21 -24.42 14 10 H 0.08 3.83 7.91 -2.91 -0.02 3.81 14 11 C 0.04 1.91 5.14 85.25 0.44 2.35 14 12 N -0.81 -38.65 10.95 21.82 0.24 -38.42 14 13 Si 0.98 35.23 29.60 68.60 2.03 37.26 14 14 H -0.26 -9.25 7.11 99.48 0.71 -8.54 14 15 H -0.27 -9.15 7.11 99.48 0.71 -8.44 14 16 H -0.26 -9.30 7.11 99.48 0.71 -8.59 14 17 C -0.22 -10.30 8.53 22.85 0.19 -10.10 14 18 H 0.44 12.61 8.82 -92.70 -0.82 11.79 14 19 H 0.10 4.00 6.99 -2.91 -0.02 3.98 14 20 H 0.12 4.38 8.06 -2.91 -0.02 4.36 14 21 H 0.10 4.47 8.06 -2.91 -0.02 4.44 14 22 H 0.29 12.42 8.30 -92.71 -0.77 11.66 14 23 H 0.12 5.74 6.16 -2.91 -0.02 5.73 14 Total: -1.00 -53.49 219.14 6.93 -46.56 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.43 Total: 20.19 kcal Atomic # 6 Polarization: -31.41 SS G_CDS: 4.40 Total: -27.01 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: 0.07 Total: -77.00 kcal Atomic # 14 Polarization: 35.23 SS G_CDS: 2.03 Total: 37.26 kcal Total: -53.49 6.93 -46.56 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306354953.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.439 kcal (2) G-P(sol) polarization free energy of solvation -53.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds