Wall clock time and date at job start Mon Mar 30 2020 02:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31447 * 1 3 3 Si 1.86800 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47107 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46867 * 299.99865 * 3 2 1 6 6 H 1.48500 * 109.47456 * 59.99810 * 3 2 1 7 7 C 1.38755 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99981 * 179.97438 * 7 2 1 9 9 O 1.34919 * 119.99494 * 359.97438 * 7 2 1 10 10 C 1.34315 * 116.99619 * 180.02562 * 9 7 2 11 11 O 1.21209 * 120.00170 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00071 * 179.97438 * 10 9 7 13 13 F 1.39901 * 112.84519 * 45.33392 * 12 10 9 14 14 C 1.53780 * 113.61555 * 274.14206 * 12 10 9 15 15 C 1.53962 * 87.01608 * 220.04475 * 14 12 10 16 16 C 1.53780 * 87.11158 * 25.36395 * 15 14 12 17 17 H 0.97001 * 119.99942 * 0.02562 * 1 2 3 18 18 H 1.09000 * 113.61461 * 334.56184 * 14 12 10 19 19 H 1.08995 * 113.61894 * 105.46921 * 14 12 10 20 20 H 1.08997 * 113.53543 * 270.80721 * 15 14 12 21 21 H 1.08998 * 113.73879 * 139.94319 * 15 14 12 22 22 H 1.09005 * 113.61134 * 220.09229 * 16 15 14 23 23 H 1.09002 * 113.69315 * 89.19485 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7084 1.3464 -0.0006 5 1 1.8896 2.3964 -1.2126 6 1 1.8897 2.3965 1.2124 7 6 2.0083 -1.2016 -0.0005 8 1 3.0883 -1.2015 -0.0010 9 8 1.3337 -2.3700 -0.0005 10 6 2.0653 -3.4965 -0.0005 11 8 3.2757 -3.4330 -0.0001 12 6 1.3811 -4.8393 0.0000 13 9 0.3267 -4.9121 -0.9165 14 6 1.0113 -5.3417 1.4056 15 6 1.4503 -6.7399 0.9337 16 6 2.3546 -6.0267 -0.0853 17 1 -0.4850 0.8401 -0.0004 18 1 1.6396 -4.9303 2.1957 19 1 -0.0530 -5.2695 1.6292 20 1 0.6469 -7.3169 0.4760 21 1 2.0010 -7.3041 1.6863 22 1 2.3730 -6.5067 -1.0638 23 1 3.3512 -5.8024 0.2950 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306390959.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:12 Heat of formation + Delta-G solvation = -109.300396 kcal Electronic energy + Delta-G solvation = -11659.797267 eV Core-core repulsion = 9195.777756 eV Total energy + Delta-G solvation = -2464.019511 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 188.064 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -47.31877 -39.19563 -37.25723 -34.98215 -32.19205 -26.92841 -25.64358 -24.84162 -21.09374 -19.06060 -17.82311 -17.30095 -15.73871 -15.38110 -14.80312 -14.35580 -14.13452 -13.97459 -13.08373 -12.52721 -12.26501 -11.75505 -11.33155 -11.16616 -10.85515 -10.79634 -10.50265 -10.42005 -10.10240 -9.81996 -8.96593 -8.62625 -6.45191 -4.13632 3.01802 3.16731 3.24717 3.33685 3.83749 4.35083 4.42891 4.59290 4.85370 4.92803 5.13566 5.62600 5.76871 5.88992 5.98181 6.07521 6.14179 6.43661 6.77413 7.34249 7.88421 8.58942 9.02072 9.76659 10.71919 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.076713 B = 0.010921 C = 0.010259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.909908 B = 2563.301099 C = 2728.655495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.043 3.957 3 Si 0.945 3.055 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.386 4.386 8 H 0.098 0.902 9 O -0.199 6.199 10 C 0.385 3.615 11 O -0.544 6.544 12 C 0.111 3.889 13 F -0.178 7.178 14 C -0.144 4.144 15 C -0.140 4.140 16 C -0.136 4.136 17 H 0.271 0.729 18 H 0.101 0.899 19 H 0.088 0.912 20 H 0.086 0.914 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.333 -8.287 1.945 8.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.162 4.162 3 Si 0.769 3.231 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.462 4.462 8 H 0.116 0.884 9 O -0.105 6.105 10 C 0.230 3.770 11 O -0.442 6.442 12 C 0.091 3.909 13 F -0.158 7.158 14 C -0.182 4.182 15 C -0.177 4.177 16 C -0.174 4.174 17 H 0.081 0.919 18 H 0.120 0.880 19 H 0.106 0.894 20 H 0.104 0.896 21 H 0.097 0.903 22 H 0.100 0.900 23 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.411 -8.090 1.917 8.433 hybrid contribution 0.218 0.869 -0.151 0.908 sum 1.629 -7.221 1.766 7.610 Atomic orbital electron populations 1.70023 1.06083 1.27790 1.45475 1.25406 0.95845 0.99007 0.95920 0.85584 0.79467 0.79805 0.78211 1.18849 1.20039 1.20048 1.21362 0.92514 0.79786 1.52511 0.88422 1.83926 1.39277 1.13300 1.73962 1.23039 0.86752 0.86897 0.80332 1.90554 1.14973 1.87416 1.51232 1.21573 0.86447 0.92176 0.90679 1.92869 1.58122 1.97090 1.67703 1.23511 1.03677 0.95871 0.95129 1.22908 0.99609 0.96194 0.98972 1.23455 0.99370 0.93464 1.01106 0.91938 0.88020 0.89370 0.89567 0.90316 0.90011 0.87046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.58 13.67 55.48 0.76 -24.82 14 2 C 0.04 1.24 5.49 -17.53 -0.10 1.14 14 3 Si 0.95 21.42 29.55 -169.99 -5.02 16.39 14 4 H -0.26 -5.89 7.11 56.52 0.40 -5.48 14 5 H -0.27 -6.02 7.11 56.52 0.40 -5.62 14 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 14 7 C -0.39 -11.68 9.64 30.92 0.30 -11.38 14 8 H 0.10 2.95 6.86 -52.49 -0.36 2.59 14 9 O -0.20 -5.97 9.75 -20.71 -0.20 -6.18 14 10 C 0.38 9.99 7.28 36.01 0.26 10.25 14 11 O -0.54 -14.81 15.12 -19.05 -0.29 -15.10 14 12 C 0.11 2.26 2.04 -90.96 -0.19 2.07 14 13 F -0.18 -3.81 17.23 2.25 0.04 -3.77 14 14 C -0.14 -2.34 7.54 -25.82 -0.19 -2.54 14 15 C -0.14 -1.81 8.07 -25.82 -0.21 -2.02 14 16 C -0.14 -2.17 7.33 -25.92 -0.19 -2.36 14 17 H 0.27 7.32 8.31 -40.82 -0.34 6.98 14 18 H 0.10 1.62 8.09 -51.93 -0.42 1.20 14 19 H 0.09 1.36 8.14 -51.93 -0.42 0.93 14 20 H 0.09 1.02 8.14 -51.93 -0.42 0.59 14 21 H 0.08 0.84 8.14 -51.93 -0.42 0.42 14 22 H 0.08 1.18 8.14 -51.93 -0.42 0.76 14 23 H 0.11 1.81 7.39 -51.93 -0.38 1.43 14 LS Contribution 217.24 15.07 3.27 3.27 Total: -1.00 -33.08 217.24 -3.75 -36.83 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: -1.99 Total: -1.79 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -0.31 Total: -4.84 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.76 Total: -24.82 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.49 Total: -21.28 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.04 Total: -3.77 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -33.08 -3.75 -36.83 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306390959.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.470 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds