Wall clock time and date at job start Mon Mar 30 2020 01:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 120.00206 * 2 1 4 4 H 1.48503 * 109.47369 * 269.99667 * 3 2 1 5 5 H 1.48503 * 109.47490 * 29.99994 * 3 2 1 6 6 H 1.48508 * 109.47280 * 150.00012 * 3 2 1 7 7 C 1.38817 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99732 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00182 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00274 * 180.02562 * 9 7 2 11 11 H 1.09006 * 109.23239 * 326.99708 * 10 9 7 12 12 C 1.52961 * 109.18091 * 207.58980 * 10 9 7 13 13 C 1.54033 * 106.91030 * 203.62736 * 12 10 9 14 14 S 1.81931 * 104.45932 * 32.59281 * 13 12 10 15 15 C 1.50444 * 109.25060 * 86.44902 * 10 9 7 16 16 O 1.21333 * 125.75278 * 322.03020 * 15 10 9 17 17 H 0.97006 * 119.99762 * 359.97438 * 1 2 3 18 18 H 0.97007 * 119.99623 * 359.97438 * 9 7 2 19 19 H 1.08997 * 109.97366 * 322.98847 * 12 10 9 20 20 H 1.08992 * 109.97460 * 84.26453 * 12 10 9 21 21 H 1.08993 * 110.45057 * 151.53174 * 13 12 10 22 22 H 1.09000 * 110.45001 * 274.08127 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1121 -2.4710 -0.0011 11 1 3.5439 -3.2141 0.5584 12 6 5.4719 -2.2667 0.6687 13 6 6.4046 -3.3703 0.1349 14 16 5.8390 -3.6575 -1.5702 15 6 4.2844 -2.9429 -1.4192 16 8 3.4619 -2.8407 -2.3053 17 1 -0.4850 0.8401 0.0004 18 1 3.8646 -0.3621 0.0004 19 1 5.8704 -1.2855 0.4108 20 1 5.3713 -2.3554 1.7503 21 1 7.4402 -3.0306 0.1432 22 1 6.2962 -4.2795 0.7262 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306462209.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:25 Heat of formation + Delta-G solvation = -21.246820 kcal Electronic energy + Delta-G solvation = -9604.607272 eV Core-core repulsion = 7672.504794 eV Total energy + Delta-G solvation = -1932.102478 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 187.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.71371 -36.03887 -33.25047 -30.88931 -27.00510 -24.06797 -22.67176 -20.42014 -17.83472 -16.95961 -15.93769 -15.36189 -14.35793 -13.96809 -13.71978 -13.30524 -12.94347 -12.79736 -12.26103 -11.24276 -11.06143 -10.88534 -10.45005 -10.29935 -9.81449 -9.68661 -8.72528 -8.16267 -7.44073 -5.91853 -3.29932 1.74146 2.20377 2.40913 3.26043 3.31660 3.36682 4.44907 4.52362 4.74885 5.11645 5.17116 5.33056 5.50852 5.58582 5.65779 6.04079 6.18822 7.60306 7.78683 8.23620 8.97011 9.68267 9.82034 11.25040 Molecular weight = 187.04amu Principal moments of inertia in cm(-1) A = 0.061816 B = 0.012863 C = 0.011879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.851401 B = 2176.271806 C = 2356.563981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.016 3.984 3 Si 0.883 3.117 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.256 4.256 8 H 0.095 0.905 9 N -0.716 5.716 10 C 0.127 3.873 11 H 0.103 0.897 12 C -0.127 4.127 13 C -0.075 4.075 14 S -0.266 6.266 15 C 0.352 3.648 16 O -0.392 6.392 17 H 0.263 0.737 18 H 0.368 0.632 19 H 0.082 0.918 20 H 0.099 0.901 21 H 0.106 0.894 22 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.328 -4.528 2.849 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.181 4.181 3 Si 0.713 3.287 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.386 4.386 8 H 0.113 0.887 9 N -0.357 5.357 10 C 0.007 3.993 11 H 0.120 0.880 12 C -0.166 4.166 13 C -0.223 4.223 14 S -0.036 6.036 15 C 0.112 3.888 16 O -0.264 6.264 17 H 0.073 0.927 18 H 0.202 0.798 19 H 0.101 0.899 20 H 0.117 0.883 21 H 0.124 0.876 22 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 13.123 -5.033 1.430 14.127 hybrid contribution -0.074 1.754 0.775 1.919 sum 13.048 -3.279 2.205 13.634 Atomic orbital electron populations 1.69696 1.05162 1.26251 1.55471 1.24678 0.95259 0.97338 1.00864 0.86586 0.79247 0.84812 0.78089 1.20723 1.21223 1.20139 1.19069 0.79730 0.95248 1.44519 0.88748 1.42744 1.04587 1.00717 1.87701 1.21455 0.93863 0.92366 0.91630 0.87960 1.22216 0.93378 0.98801 1.02168 1.23884 1.02833 1.02600 0.93024 1.86088 1.25242 1.73300 1.19004 1.28402 0.88305 0.77595 0.94500 1.90572 1.44307 1.47285 1.44214 0.92653 0.79777 0.89946 0.88268 0.87572 0.88190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.66 13.97 55.49 0.78 -27.89 14 2 C 0.02 0.47 5.50 -17.43 -0.10 0.38 14 3 Si 0.88 21.60 27.74 -169.99 -4.71 16.88 14 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 14 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 14 6 H -0.28 -6.14 6.52 56.52 0.37 -5.78 14 7 C -0.26 -7.19 10.27 -15.06 -0.15 -7.34 14 8 H 0.09 2.87 8.06 -52.49 -0.42 2.45 14 9 N -0.72 -16.56 4.82 -54.69 -0.26 -16.83 14 10 C 0.13 2.34 3.14 -69.23 -0.22 2.12 14 11 H 0.10 1.87 8.06 -51.93 -0.42 1.45 14 12 C -0.13 -1.64 6.19 -26.21 -0.16 -1.81 14 13 C -0.07 -0.81 7.22 37.70 0.27 -0.54 14 14 S -0.27 -4.16 22.85 -107.50 -2.46 -6.61 14 15 C 0.35 7.07 7.44 35.88 0.27 7.34 14 16 O -0.39 -9.65 17.82 5.51 0.10 -9.56 14 17 H 0.26 7.75 8.31 -40.82 -0.34 7.42 14 18 H 0.37 8.21 5.49 -40.82 -0.22 7.98 14 19 H 0.08 1.06 7.87 -51.93 -0.41 0.66 14 20 H 0.10 1.09 8.14 -51.93 -0.42 0.67 14 21 H 0.11 0.91 8.14 -51.93 -0.42 0.49 14 22 H 0.10 0.89 8.14 -51.93 -0.42 0.46 14 LS Contribution 209.89 15.07 3.16 3.16 Total: -1.00 -32.68 209.89 -5.40 -38.08 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -1.91 Total: 2.61 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -0.09 Total: 0.15 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.51 Total: -44.71 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.10 Total: -9.56 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.88 kcal Atomic # 16 Polarization: -4.16 SS G_CDS: -2.46 Total: -6.61 kcal Total LS contribution 3.16 Total: 3.16 kcal Total: -32.68 -5.40 -38.08 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306462209.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.831 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds