Wall clock time and date at job start Mon Mar 30 2020 02:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.45336 * 2 1 4 4 C 1.53071 * 109.45352 * 119.80943 * 2 1 3 5 5 C 1.53194 * 109.29512 * 181.24244 * 4 2 1 6 6 N 1.46927 * 108.89087 * 305.58241 * 5 4 2 7 7 C 1.36938 * 120.62952 * 233.55303 * 6 5 4 8 8 H 1.08004 * 119.99743 * 27.96484 * 7 6 5 9 9 C 1.38809 * 120.00327 * 207.96044 * 7 6 5 10 10 N 1.31619 * 119.99669 * 17.50758 * 9 7 6 11 11 Si 1.86796 * 120.00467 * 197.50314 * 9 7 6 12 12 H 1.48499 * 109.46954 * 94.06791 * 11 9 7 13 13 H 1.48494 * 109.47528 * 214.06816 * 11 9 7 14 14 H 1.48504 * 109.47085 * 334.07259 * 11 9 7 15 15 C 1.46920 * 118.73819 * 53.53709 * 6 5 4 16 16 C 1.53037 * 109.45981 * 240.02634 * 2 1 3 17 17 H 1.09001 * 109.49885 * 298.56475 * 16 2 1 18 18 F 1.39896 * 109.52301 * 58.64198 * 16 2 1 19 19 H 1.09006 * 109.46997 * 179.97438 * 1 2 3 20 20 H 1.09008 * 109.46764 * 299.97182 * 1 2 3 21 21 H 1.08991 * 109.47397 * 59.97604 * 1 2 3 22 22 H 1.09003 * 109.39038 * 61.37161 * 4 2 1 23 23 H 1.09001 * 109.62511 * 301.26184 * 4 2 1 24 24 H 1.08996 * 109.58668 * 185.72523 * 5 4 2 25 25 H 1.08999 * 109.58546 * 65.43888 * 5 4 2 26 26 H 0.97004 * 120.00381 * 179.97438 * 10 9 7 27 27 H 1.08999 * 109.58992 * 66.18201 * 15 6 5 28 28 H 1.09006 * 109.58610 * 186.60301 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7175 1.2524 5 6 3.5714 -0.6882 1.2644 6 7 4.0678 -1.2487 0.0002 7 6 4.9758 -2.2738 0.0003 8 1 5.0054 -2.9688 0.8265 9 6 5.8580 -2.4198 -1.0614 10 7 6.0696 -1.4145 -1.8842 11 14 6.7450 -4.0429 -1.3224 12 1 5.9777 -4.8777 -2.2813 13 1 8.1018 -3.7835 -1.8674 14 1 6.8607 -4.7578 -0.0260 15 6 3.5713 -0.6887 -1.2641 16 6 2.0399 -0.7209 -1.2500 17 1 1.6978 -1.7558 -1.2381 18 9 1.5487 -0.0800 -2.3923 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5134 0.8903 21 1 -0.3634 0.5142 -0.8897 22 1 1.6958 -1.7518 1.2421 23 1 1.6593 -0.2158 2.1421 24 1 3.9417 -1.2840 2.0986 25 1 3.9164 0.3405 1.3684 26 1 6.6863 -1.5163 -2.6259 27 1 3.9142 0.3408 -1.3675 28 1 3.9416 -1.2848 -2.0982 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306464672.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:39 Heat of formation + Delta-G solvation = -47.205779 kcal Electronic energy + Delta-G solvation = -12114.000556 eV Core-core repulsion = 9886.225426 eV Total energy + Delta-G solvation = -2227.775129 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.107 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -46.83632 -37.40582 -33.77019 -31.08523 -29.37018 -27.39179 -24.10429 -22.11078 -21.10023 -19.33804 -16.90534 -15.29246 -15.05125 -14.71923 -14.05119 -13.72929 -13.51669 -12.96178 -12.22289 -12.19571 -12.04838 -11.52198 -11.29876 -10.94175 -10.77705 -10.44692 -10.19189 -10.13312 -9.86586 -9.69282 -9.32800 -8.52519 -6.75507 -5.83732 -3.28206 3.36334 3.43299 3.44838 4.45283 5.06742 5.24321 5.30272 5.35024 5.52251 5.78459 5.87297 5.93724 6.09657 6.17053 6.25436 6.30459 6.44795 6.66665 6.70107 6.79868 6.93793 7.19311 7.58103 7.75366 8.38391 9.13658 9.77300 10.33575 11.24737 Molecular weight = 187.11amu Principal moments of inertia in cm(-1) A = 0.055605 B = 0.013016 C = 0.011587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.429566 B = 2150.644635 C = 2415.955410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 H 0.071 0.929 4 C -0.126 4.126 5 C 0.141 3.859 6 N -0.589 5.589 7 C -0.259 4.259 8 H 0.069 0.931 9 C 0.004 3.996 10 N -0.900 5.900 11 Si 0.905 3.095 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.278 1.278 15 C 0.152 3.848 16 C 0.066 3.934 17 H 0.072 0.928 18 F -0.226 7.226 19 H 0.051 0.949 20 H 0.051 0.949 21 H 0.054 0.946 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.020 0.980 26 H 0.256 0.744 27 H 0.029 0.971 28 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.751 1.214 3.423 8.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 H 0.090 0.910 4 C -0.165 4.165 5 C 0.015 3.985 6 N -0.311 5.311 7 C -0.388 4.388 8 H 0.087 0.913 9 C -0.196 4.196 10 N -0.544 5.544 11 Si 0.734 3.266 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.203 1.203 15 C 0.025 3.975 16 C 0.028 3.972 17 H 0.090 0.910 18 F -0.207 7.207 19 H 0.070 0.930 20 H 0.070 0.930 21 H 0.073 0.927 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.038 0.962 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.616 1.228 3.272 8.380 hybrid contribution 0.432 -0.719 -0.293 0.889 sum -7.184 0.509 2.979 7.794 Atomic orbital electron populations 1.21832 0.95718 1.01486 1.01310 1.21601 0.95200 1.00346 0.95770 0.91018 1.22061 0.98809 0.99992 0.95668 1.20991 0.90882 0.96665 0.89998 1.43927 1.48241 1.39888 0.99093 1.19212 1.09831 1.03034 1.06772 0.91320 1.25100 0.97080 0.97563 0.99816 1.70035 1.37313 1.28894 1.18143 0.86239 0.78761 0.83456 0.78110 1.21345 1.21670 1.20283 1.21272 0.86079 0.98693 0.91430 1.22550 0.99153 0.95055 0.80465 0.91003 1.92698 1.89627 1.84511 1.53871 0.92984 0.92965 0.92660 0.92129 0.92407 0.92431 0.96209 0.93425 0.95258 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.06 37.16 0.34 -1.80 15 2 C -0.11 -1.94 2.48 -90.56 -0.22 -2.17 15 3 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 4 C -0.13 -2.18 5.37 -26.59 -0.14 -2.32 15 5 C 0.14 2.94 6.51 -3.71 -0.02 2.92 15 6 N -0.59 -14.90 3.00 -172.33 -0.52 -15.41 15 7 C -0.26 -7.12 9.58 -15.06 -0.14 -7.26 15 8 H 0.07 1.84 7.89 -52.48 -0.41 1.42 15 9 C 0.00 0.10 4.90 -17.43 -0.09 0.01 15 10 N -0.90 -26.36 11.22 55.49 0.62 -25.74 15 11 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 15 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 15 C 0.15 3.76 5.05 -3.72 -0.02 3.75 15 16 C 0.07 1.36 3.45 -26.62 -0.09 1.27 15 17 H 0.07 1.48 8.14 -51.93 -0.42 1.06 15 18 F -0.23 -4.73 16.52 2.25 0.04 -4.69 15 19 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 20 H 0.05 0.66 8.14 -51.92 -0.42 0.24 15 21 H 0.05 0.81 7.77 -51.93 -0.40 0.40 15 22 H 0.06 1.06 8.14 -51.93 -0.42 0.63 15 23 H 0.06 0.85 8.14 -51.93 -0.42 0.42 15 24 H 0.06 1.16 7.93 -51.93 -0.41 0.75 15 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 15 26 H 0.26 7.21 8.31 -40.82 -0.34 6.88 15 27 H 0.03 0.77 8.14 -51.93 -0.42 0.34 15 28 H 0.10 2.64 6.06 -51.93 -0.31 2.32 15 LS Contribution 231.15 15.07 3.48 3.48 Total: -1.00 -28.96 231.15 -5.86 -34.82 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -4.06 Total: -3.47 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -0.40 Total: -5.60 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.11 Total: -41.15 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.04 Total: -4.69 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -28.96 -5.86 -34.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306464672.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.384 kcal (2) G-P(sol) polarization free energy of solvation -28.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds