Wall clock time and date at job start Mon Mar 30 2020 02:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.45336 * 2 1 4 4 C 1.53071 * 109.45352 * 119.80943 * 2 1 3 5 5 C 1.53194 * 109.29512 * 181.24244 * 4 2 1 6 6 N 1.46927 * 108.89087 * 305.58241 * 5 4 2 7 7 C 1.36938 * 120.62952 * 233.55303 * 6 5 4 8 8 H 1.08004 * 119.99743 * 27.96484 * 7 6 5 9 9 C 1.38809 * 120.00327 * 207.96044 * 7 6 5 10 10 N 1.31619 * 119.99669 * 17.50758 * 9 7 6 11 11 Si 1.86796 * 120.00467 * 197.50314 * 9 7 6 12 12 H 1.48499 * 109.46954 * 94.06791 * 11 9 7 13 13 H 1.48494 * 109.47528 * 214.06816 * 11 9 7 14 14 H 1.48504 * 109.47085 * 334.07259 * 11 9 7 15 15 C 1.46920 * 118.73819 * 53.53709 * 6 5 4 16 16 C 1.53037 * 109.45981 * 240.02634 * 2 1 3 17 17 H 1.09001 * 109.49885 * 298.56475 * 16 2 1 18 18 F 1.39896 * 109.52301 * 58.64198 * 16 2 1 19 19 H 1.09006 * 109.46997 * 179.97438 * 1 2 3 20 20 H 1.09008 * 109.46764 * 299.97182 * 1 2 3 21 21 H 1.08991 * 109.47397 * 59.97604 * 1 2 3 22 22 H 1.09003 * 109.39038 * 61.37161 * 4 2 1 23 23 H 1.09001 * 109.62511 * 301.26184 * 4 2 1 24 24 H 1.08996 * 109.58668 * 185.72523 * 5 4 2 25 25 H 1.08999 * 109.58546 * 65.43888 * 5 4 2 26 26 H 0.97004 * 120.00381 * 179.97438 * 10 9 7 27 27 H 1.08999 * 109.58992 * 66.18201 * 15 6 5 28 28 H 1.09006 * 109.58610 * 186.60301 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7175 1.2524 5 6 3.5714 -0.6882 1.2644 6 7 4.0678 -1.2487 0.0002 7 6 4.9758 -2.2738 0.0003 8 1 5.0054 -2.9688 0.8265 9 6 5.8580 -2.4198 -1.0614 10 7 6.0696 -1.4145 -1.8842 11 14 6.7450 -4.0429 -1.3224 12 1 5.9777 -4.8777 -2.2813 13 1 8.1018 -3.7835 -1.8674 14 1 6.8607 -4.7578 -0.0260 15 6 3.5713 -0.6887 -1.2641 16 6 2.0399 -0.7209 -1.2500 17 1 1.6978 -1.7558 -1.2381 18 9 1.5487 -0.0800 -2.3923 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5134 0.8903 21 1 -0.3634 0.5142 -0.8897 22 1 1.6958 -1.7518 1.2421 23 1 1.6593 -0.2158 2.1421 24 1 3.9417 -1.2840 2.0986 25 1 3.9164 0.3405 1.3684 26 1 6.6863 -1.5163 -2.6259 27 1 3.9142 0.3408 -1.3675 28 1 3.9416 -1.2848 -2.0982 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306464672.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:38 Heat of formation + Delta-G solvation = -64.248094 kcal Electronic energy + Delta-G solvation = -12114.739566 eV Core-core repulsion = 9886.225426 eV Total energy + Delta-G solvation = -2228.514140 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.107 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.53422 -39.09568 -35.54596 -32.96575 -31.11545 -29.06167 -25.93302 -23.80805 -22.77158 -20.97749 -18.87618 -17.15657 -16.80186 -16.31508 -15.90178 -15.45491 -15.25515 -14.56695 -13.96848 -13.71874 -13.52901 -13.12701 -12.93084 -12.75177 -12.58254 -12.22874 -11.90088 -11.88946 -11.52806 -11.34492 -11.02396 -10.60492 -8.78476 -7.93409 -5.41356 1.46156 1.47895 1.57392 2.47697 3.19197 3.47797 3.69305 3.87540 3.92843 4.12180 4.29238 4.59538 4.64165 4.77338 4.87358 4.92350 5.07771 5.11863 5.15185 5.24914 5.38841 5.43296 5.59877 5.64267 6.32097 7.05603 7.75922 8.28558 9.13418 Molecular weight = 187.11amu Principal moments of inertia in cm(-1) A = 0.055605 B = 0.013016 C = 0.011587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.429566 B = 2150.644635 C = 2415.955410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 H 0.066 0.934 4 C -0.113 4.113 5 C 0.133 3.867 6 N -0.607 5.607 7 C -0.269 4.269 8 H 0.075 0.925 9 C -0.052 4.052 10 N -0.937 5.937 11 Si 0.972 3.028 12 H -0.286 1.286 13 H -0.295 1.295 14 H -0.263 1.263 15 C 0.159 3.841 16 C 0.074 3.926 17 H 0.075 0.925 18 F -0.228 7.228 19 H 0.059 0.941 20 H 0.079 0.921 21 H 0.052 0.948 22 H 0.063 0.937 23 H 0.096 0.904 24 H 0.063 0.937 25 H 0.016 0.984 26 H 0.251 0.749 27 H 0.002 0.998 28 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.180 0.674 4.793 10.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.126 4.126 3 H 0.085 0.915 4 C -0.152 4.152 5 C 0.008 3.992 6 N -0.330 5.330 7 C -0.398 4.398 8 H 0.093 0.907 9 C -0.248 4.248 10 N -0.582 5.582 11 Si 0.799 3.201 12 H -0.212 1.212 13 H -0.221 1.221 14 H -0.187 1.187 15 C 0.032 3.968 16 C 0.036 3.964 17 H 0.093 0.907 18 F -0.209 7.209 19 H 0.078 0.922 20 H 0.098 0.902 21 H 0.071 0.929 22 H 0.082 0.918 23 H 0.115 0.885 24 H 0.082 0.918 25 H 0.034 0.966 26 H 0.060 0.940 27 H 0.021 0.979 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.072 0.691 4.672 10.228 hybrid contribution 0.891 -0.502 -0.695 1.237 sum -8.181 0.188 3.977 9.098 Atomic orbital electron populations 1.21769 0.92683 1.02450 1.02635 1.21588 0.97625 0.99442 0.93923 0.91540 1.21948 0.95546 1.00706 0.96991 1.21218 0.93656 0.96147 0.88169 1.44186 1.48348 1.39939 1.00545 1.19596 1.09765 1.03678 1.06809 0.90707 1.25920 0.98356 1.00647 0.99845 1.70197 1.38357 1.30919 1.18760 0.85190 0.77069 0.79487 0.78346 1.21245 1.22147 1.18737 1.21009 0.89078 0.96209 0.90531 1.22387 0.96037 0.95986 0.82040 0.90654 1.92694 1.89328 1.84569 1.54345 0.92203 0.90212 0.92851 0.91835 0.88546 0.91845 0.96617 0.93952 0.97946 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.06 71.98 0.65 -2.85 15 2 C -0.11 -3.50 2.48 -10.76 -0.03 -3.52 15 3 H 0.07 2.26 8.14 -2.38 -0.02 2.24 15 4 C -0.11 -3.54 5.37 30.68 0.16 -3.38 15 5 C 0.13 5.37 6.51 86.36 0.56 5.93 15 6 N -0.61 -30.78 3.00 -699.11 -2.09 -32.87 15 7 C -0.27 -14.78 9.58 84.03 0.81 -13.98 15 8 H 0.08 3.94 7.89 -2.91 -0.02 3.92 15 9 C -0.05 -2.94 4.90 84.86 0.42 -2.52 15 10 N -0.94 -56.53 11.22 21.65 0.24 -56.29 15 11 Si 0.97 44.87 29.59 68.60 2.03 46.90 15 12 H -0.29 -13.04 7.11 99.48 0.71 -12.34 15 13 H -0.29 -13.72 7.11 99.48 0.71 -13.01 15 14 H -0.26 -11.40 7.11 99.48 0.71 -10.69 15 15 C 0.16 8.05 5.05 86.36 0.44 8.48 15 16 C 0.07 2.98 3.45 30.67 0.11 3.09 15 17 H 0.08 3.02 8.14 -2.39 -0.02 3.00 15 18 F -0.23 -9.44 16.52 44.97 0.74 -8.69 15 19 H 0.06 1.44 8.14 -2.38 -0.02 1.42 15 20 H 0.08 1.62 8.14 -2.38 -0.02 1.60 15 21 H 0.05 1.38 7.77 -2.39 -0.02 1.36 15 22 H 0.06 1.99 8.14 -2.39 -0.02 1.97 15 23 H 0.10 2.34 8.14 -2.39 -0.02 2.33 15 24 H 0.06 2.45 7.93 -2.39 -0.02 2.43 15 25 H 0.02 0.65 8.14 -2.39 -0.02 0.63 15 26 H 0.25 14.67 8.31 -92.71 -0.77 13.89 15 27 H 0.00 0.14 8.14 -2.39 -0.02 0.12 15 28 H 0.06 3.39 6.06 -2.38 -0.01 3.37 15 Total: -1.00 -62.63 231.15 5.16 -57.47 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: 1.12 Total: 2.23 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 3.12 Total: -8.74 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -1.85 Total: -89.16 kcal Atomic # 9 Polarization: -9.44 SS G_CDS: 0.74 Total: -8.69 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -62.63 5.16 -57.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306464672.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.776 kcal (2) G-P(sol) polarization free energy of solvation -62.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds