Wall clock time and date at job start Mon Mar 30 2020 02:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47580 * 2 1 4 4 C 1.50705 * 109.47195 * 239.99905 * 2 1 3 5 5 H 1.08000 * 120.00257 * 245.37900 * 4 2 1 6 6 C 1.37885 * 119.99802 * 65.37685 * 4 2 1 7 7 N 1.31513 * 119.99671 * 185.16609 * 6 4 2 8 8 Si 1.86794 * 119.99805 * 5.16501 * 6 4 2 9 9 H 1.48504 * 109.47224 * 270.00072 * 8 6 4 10 10 H 1.48500 * 109.47377 * 30.00114 * 8 6 4 11 11 H 1.48503 * 109.46985 * 150.00183 * 8 6 4 12 12 N 1.46900 * 109.47607 * 120.00346 * 2 1 3 13 13 C 1.46903 * 110.99941 * 275.00213 * 12 2 1 14 14 C 1.53041 * 113.15083 * 255.54286 * 13 12 2 15 15 S 1.81492 * 89.86594 * 211.86448 * 14 13 12 16 16 C 1.53038 * 113.15570 * 155.11329 * 13 12 2 17 17 H 1.09001 * 109.47403 * 174.98010 * 1 2 3 18 18 H 1.08999 * 109.46930 * 294.97352 * 1 2 3 19 19 H 1.08995 * 109.46839 * 54.97773 * 1 2 3 20 20 H 0.96993 * 120.00361 * 355.00159 * 7 6 4 21 21 H 1.00895 * 111.00652 * 151.04257 * 12 2 1 22 22 H 1.09004 * 112.49624 * 25.32735 * 13 12 2 23 23 H 1.09007 * 113.14964 * 327.11397 * 14 13 12 24 24 H 1.09001 * 113.14990 * 96.58994 * 14 13 12 25 25 H 1.08996 * 113.14734 * 263.40569 * 16 13 12 26 26 H 1.09004 * 113.15003 * 32.84348 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5797 -1.6364 -1.1338 6 6 1.7930 -0.1783 -2.4798 7 7 2.1413 -0.8472 -3.5572 8 14 0.9742 1.4928 -2.6418 9 1 -0.4990 1.3180 -2.7073 10 1 1.3215 2.3304 -1.4658 11 1 1.4493 2.1587 -3.8813 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 6 3.5077 0.6651 2.6863 15 16 3.0531 0.7693 4.4402 16 6 1.9870 -0.4955 3.6950 17 1 -0.3634 -1.0237 -0.0899 18 1 -0.3633 0.4339 0.9316 19 1 -0.3633 0.5898 -0.8416 20 1 2.6310 -1.6803 -3.4736 21 1 2.9173 -1.1206 1.0287 22 1 1.3856 1.0555 2.2547 23 1 4.2547 -0.1020 2.4820 24 1 3.7712 1.6301 2.2534 25 1 0.9777 -0.5019 4.1065 26 1 2.4397 -1.4870 3.6855 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306476366.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:01 Heat of formation + Delta-G solvation = 16.028333 kcal Electronic energy + Delta-G solvation = -9835.266544 eV Core-core repulsion = 8040.613533 eV Total energy + Delta-G solvation = -1794.653011 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.60113 -34.15500 -31.69446 -28.14810 -26.06893 -24.74765 -20.99833 -19.89852 -17.58538 -16.31799 -15.55576 -14.67456 -14.20809 -13.47090 -13.09034 -12.77895 -12.43259 -12.11824 -11.60888 -11.55133 -11.11525 -10.72904 -10.53297 -10.15943 -10.03180 -9.74518 -8.75665 -8.55435 -7.80127 -7.64752 -6.51070 -4.18458 1.94825 2.10444 3.33053 3.37628 3.53163 4.41078 4.59772 4.88578 5.12545 5.22960 5.33243 5.49161 5.60324 5.81208 6.05611 6.33321 6.51214 6.65180 6.76213 7.34162 7.53922 7.91776 8.27485 8.31871 8.83950 9.52683 10.88955 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.068568 B = 0.010293 C = 0.010083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.258328 B = 2719.542679 C = 2776.154681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.180 3.820 3 H 0.005 0.995 4 C -0.600 4.600 5 H 0.061 0.939 6 C 0.030 3.970 7 N -0.910 5.910 8 Si 1.057 2.943 9 H -0.282 1.282 10 H -0.281 1.281 11 H -0.290 1.290 12 N -0.662 5.662 13 C 0.089 3.911 14 C -0.104 4.104 15 S -0.325 6.325 16 C -0.065 4.065 17 H 0.055 0.945 18 H 0.025 0.975 19 H 0.041 0.959 20 H 0.268 0.732 21 H 0.344 0.656 22 H 0.110 0.890 23 H 0.103 0.897 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.232 3.058 10.547 10.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.071 3.929 3 H 0.023 0.977 4 C -0.638 4.638 5 H 0.080 0.920 6 C -0.175 4.175 7 N -0.545 5.545 8 Si 0.887 3.113 9 H -0.209 1.209 10 H -0.207 1.207 11 H -0.217 1.217 12 N -0.293 5.293 13 C -0.024 4.024 14 C -0.255 4.255 15 S -0.102 6.102 16 C -0.214 4.214 17 H 0.074 0.926 18 H 0.044 0.956 19 H 0.059 0.941 20 H 0.078 0.922 21 H 0.164 0.836 22 H 0.128 0.872 23 H 0.121 0.879 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.131 4.552 10.818 11.791 hybrid contribution 1.212 -1.200 0.011 1.706 sum 0.081 3.352 10.829 11.336 Atomic orbital electron populations 1.22051 0.98406 1.01157 0.97924 1.19656 0.92044 0.93188 0.87980 0.97699 1.22152 1.40111 1.10362 0.91183 0.92037 1.25741 0.96394 1.03506 0.91894 1.70805 1.36539 1.16802 1.30327 0.83818 0.76461 0.75525 0.75532 1.20902 1.20674 1.21679 1.60467 1.32612 1.31023 1.05150 1.22972 0.93095 0.94769 0.91589 1.25397 1.03317 1.05724 0.91033 1.88737 1.51903 1.52065 1.17449 1.24617 1.01580 0.99497 0.95734 0.92598 0.95563 0.94056 0.92184 0.83608 0.87179 0.87874 0.88923 0.88904 0.87832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.01 37.16 0.33 -2.59 15 2 C 0.18 4.06 2.03 -68.86 -0.14 3.92 15 3 H 0.01 0.12 6.35 -51.93 -0.33 -0.21 15 4 C -0.60 -16.13 8.92 -34.44 -0.31 -16.44 15 5 H 0.06 1.77 7.90 -52.49 -0.41 1.36 15 6 C 0.03 0.83 5.43 -17.82 -0.10 0.74 15 7 N -0.91 -27.43 13.70 55.43 0.76 -26.67 15 8 Si 1.06 24.92 25.29 -169.99 -4.30 20.62 15 9 H -0.28 -6.36 6.81 56.52 0.38 -5.97 15 10 H -0.28 -6.15 6.36 56.52 0.36 -5.79 15 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 12 N -0.66 -12.58 6.38 -111.94 -0.71 -13.30 15 13 C 0.09 1.42 3.49 -67.67 -0.24 1.18 15 14 C -0.10 -1.52 7.55 37.18 0.28 -1.24 15 15 S -0.33 -4.82 24.80 -107.50 -2.67 -7.49 15 16 C -0.06 -0.90 7.76 37.18 0.29 -0.62 15 17 H 0.05 1.22 8.14 -51.93 -0.42 0.80 15 18 H 0.03 0.48 7.64 -51.93 -0.40 0.08 15 19 H 0.04 0.89 4.40 -51.93 -0.23 0.66 15 20 H 0.27 8.03 8.72 -40.82 -0.36 7.67 15 21 H 0.34 6.51 7.75 -39.29 -0.30 6.20 15 22 H 0.11 1.79 7.44 -51.93 -0.39 1.40 15 23 H 0.10 1.42 7.88 -51.92 -0.41 1.01 15 24 H 0.09 1.33 8.14 -51.93 -0.42 0.91 15 25 H 0.09 1.21 8.14 -51.93 -0.42 0.78 15 26 H 0.10 1.38 8.14 -51.93 -0.42 0.96 15 LS Contribution 225.29 15.07 3.40 3.40 Total: -1.00 -28.31 225.29 -6.77 -35.09 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -3.37 Total: 3.41 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 0.12 Total: -15.05 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.04 Total: -39.97 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -4.30 Total: 20.62 kcal Atomic # 16 Polarization: -4.82 SS G_CDS: -2.67 Total: -7.49 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -28.31 -6.77 -35.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306476366.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.114 kcal (2) G-P(sol) polarization free energy of solvation -28.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds