Wall clock time and date at job start Mon Mar 30 2020 02:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47580 * 2 1 4 4 C 1.50705 * 109.47195 * 239.99905 * 2 1 3 5 5 H 1.08000 * 120.00257 * 245.37900 * 4 2 1 6 6 C 1.37885 * 119.99802 * 65.37685 * 4 2 1 7 7 N 1.31513 * 119.99671 * 185.16609 * 6 4 2 8 8 Si 1.86794 * 119.99805 * 5.16501 * 6 4 2 9 9 H 1.48504 * 109.47224 * 270.00072 * 8 6 4 10 10 H 1.48500 * 109.47377 * 30.00114 * 8 6 4 11 11 H 1.48503 * 109.46985 * 150.00183 * 8 6 4 12 12 N 1.46900 * 109.47607 * 120.00346 * 2 1 3 13 13 C 1.46903 * 110.99941 * 275.00213 * 12 2 1 14 14 C 1.53041 * 113.15083 * 255.54286 * 13 12 2 15 15 S 1.81492 * 89.86594 * 211.86448 * 14 13 12 16 16 C 1.53038 * 113.15570 * 155.11329 * 13 12 2 17 17 H 1.09001 * 109.47403 * 174.98010 * 1 2 3 18 18 H 1.08999 * 109.46930 * 294.97352 * 1 2 3 19 19 H 1.08995 * 109.46839 * 54.97773 * 1 2 3 20 20 H 0.96993 * 120.00361 * 355.00159 * 7 6 4 21 21 H 1.00895 * 111.00652 * 151.04257 * 12 2 1 22 22 H 1.09004 * 112.49624 * 25.32735 * 13 12 2 23 23 H 1.09007 * 113.14964 * 327.11397 * 14 13 12 24 24 H 1.09001 * 113.14990 * 96.58994 * 14 13 12 25 25 H 1.08996 * 113.14734 * 263.40569 * 16 13 12 26 26 H 1.09004 * 113.15003 * 32.84348 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5797 -1.6364 -1.1338 6 6 1.7930 -0.1783 -2.4798 7 7 2.1413 -0.8472 -3.5572 8 14 0.9742 1.4928 -2.6418 9 1 -0.4990 1.3180 -2.7073 10 1 1.3215 2.3304 -1.4658 11 1 1.4493 2.1587 -3.8813 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 6 3.5077 0.6651 2.6863 15 16 3.0531 0.7693 4.4402 16 6 1.9870 -0.4955 3.6950 17 1 -0.3634 -1.0237 -0.0899 18 1 -0.3633 0.4339 0.9316 19 1 -0.3633 0.5898 -0.8416 20 1 2.6310 -1.6803 -3.4736 21 1 2.9173 -1.1206 1.0287 22 1 1.3856 1.0555 2.2547 23 1 4.2547 -0.1020 2.4820 24 1 3.7712 1.6301 2.2534 25 1 0.9777 -0.5019 4.1065 26 1 2.4397 -1.4870 3.6855 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306476366.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:01 Heat of formation + Delta-G solvation = -4.019311 kcal Electronic energy + Delta-G solvation = -9836.135875 eV Core-core repulsion = 8040.613533 eV Total energy + Delta-G solvation = -1795.522342 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.01843 -35.90042 -33.62119 -29.74067 -27.22346 -26.72522 -22.48213 -21.56263 -19.62057 -17.57532 -16.97342 -16.14237 -15.82702 -15.13779 -14.70971 -14.00260 -13.95045 -13.85571 -13.30929 -13.06570 -12.63519 -12.27874 -12.06312 -11.80168 -11.61953 -11.25974 -10.80786 -10.64090 -9.29356 -8.86038 -8.71098 -6.40005 0.79440 0.94902 1.45473 1.53882 1.70063 2.48044 3.10096 3.28840 3.61484 3.91044 4.02460 4.38456 4.46774 4.58412 4.71929 4.75971 4.86851 4.94193 5.09419 5.59513 5.73457 6.00847 6.24110 6.57754 6.72995 7.40327 8.66895 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.068568 B = 0.010293 C = 0.010083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.258328 B = 2719.542679 C = 2776.154681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.183 3.817 3 H 0.008 0.992 4 C -0.597 4.597 5 H 0.027 0.973 6 C -0.023 4.023 7 N -0.947 5.947 8 Si 1.091 2.909 9 H -0.264 1.264 10 H -0.250 1.250 11 H -0.295 1.295 12 N -0.664 5.664 13 C 0.086 3.914 14 C -0.101 4.101 15 S -0.332 6.332 16 C -0.054 4.054 17 H 0.042 0.958 18 H 0.058 0.942 19 H 0.039 0.961 20 H 0.253 0.747 21 H 0.342 0.658 22 H 0.113 0.887 23 H 0.109 0.891 24 H 0.095 0.905 25 H 0.106 0.894 26 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.044 4.335 12.164 12.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.073 3.927 3 H 0.025 0.975 4 C -0.635 4.635 5 H 0.045 0.955 6 C -0.221 4.221 7 N -0.584 5.584 8 Si 0.914 3.086 9 H -0.189 1.189 10 H -0.175 1.175 11 H -0.223 1.223 12 N -0.294 5.294 13 C -0.027 4.027 14 C -0.251 4.251 15 S -0.108 6.108 16 C -0.203 4.203 17 H 0.061 0.939 18 H 0.077 0.923 19 H 0.057 0.943 20 H 0.062 0.938 21 H 0.161 0.839 22 H 0.130 0.870 23 H 0.128 0.872 24 H 0.113 0.887 25 H 0.125 0.875 26 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.940 5.819 12.482 13.908 hybrid contribution 1.527 -1.670 -0.415 2.301 sum -0.413 4.149 12.067 12.767 Atomic orbital electron populations 1.21968 0.97030 1.00709 0.99595 1.19499 0.93042 0.92685 0.87454 0.97489 1.22413 1.38679 1.09064 0.93335 0.95457 1.27129 0.96732 1.06380 0.91826 1.70933 1.38798 1.17011 1.31613 0.83425 0.76739 0.71978 0.76447 1.18929 1.17451 1.22250 1.60411 1.32698 1.31606 1.04726 1.23062 0.94024 0.94658 0.90959 1.25335 1.02679 1.06111 0.90978 1.88838 1.52245 1.52458 1.17300 1.24530 1.02328 0.99321 0.94088 0.93860 0.92300 0.94254 0.93839 0.83862 0.86951 0.87216 0.88669 0.87510 0.87122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.38 9.01 71.98 0.65 -4.73 15 2 C 0.18 7.89 2.03 44.17 0.09 7.98 15 3 H 0.01 0.32 6.35 -2.39 -0.02 0.31 15 4 C -0.60 -32.19 8.92 25.60 0.23 -31.96 15 5 H 0.03 1.62 7.90 -2.91 -0.02 1.59 15 6 C -0.02 -1.30 5.43 84.66 0.46 -0.84 15 7 N -0.95 -58.38 13.70 21.45 0.29 -58.08 15 8 Si 1.09 48.73 25.29 68.60 1.73 50.46 15 9 H -0.26 -10.95 6.81 99.48 0.68 -10.27 15 10 H -0.25 -9.87 6.36 99.48 0.63 -9.24 15 11 H -0.30 -13.39 7.11 99.48 0.71 -12.68 15 12 N -0.66 -23.98 6.38 -508.08 -3.24 -27.22 15 13 C 0.09 2.48 3.49 44.94 0.16 2.63 15 14 C -0.10 -2.69 7.55 72.00 0.54 -2.15 15 15 S -0.33 -8.95 24.80 -56.49 -1.40 -10.35 15 16 C -0.05 -1.33 7.76 71.99 0.56 -0.77 15 17 H 0.04 1.80 8.14 -2.39 -0.02 1.78 15 18 H 0.06 1.95 7.64 -2.39 -0.02 1.93 15 19 H 0.04 1.57 4.40 -2.39 -0.01 1.56 15 20 H 0.25 15.78 8.72 -92.71 -0.81 14.97 15 21 H 0.34 12.58 7.75 -89.70 -0.70 11.89 15 22 H 0.11 3.24 7.44 -2.38 -0.02 3.23 15 23 H 0.11 2.79 7.88 -2.38 -0.02 2.77 15 24 H 0.09 2.50 8.14 -2.39 -0.02 2.48 15 25 H 0.11 2.38 8.14 -2.39 -0.02 2.36 15 26 H 0.11 2.62 8.14 -2.38 -0.02 2.60 15 Total: -1.00 -60.16 225.29 0.40 -59.75 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.33 Total: 15.28 kcal Atomic # 6 Polarization: -32.52 SS G_CDS: 2.69 Total: -29.84 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -2.95 Total: -85.31 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 1.73 Total: 50.46 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.40 Total: -10.35 kcal Total: -60.16 0.40 -59.75 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306476366.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.731 kcal (2) G-P(sol) polarization free energy of solvation -60.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds