Wall clock time and date at job start Mon Mar 30 2020 02:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.38499 * 2 1 4 4 S 1.83102 * 110.25450 * 237.88942 * 2 1 3 5 5 C 1.83982 * 95.81319 * 221.26447 * 4 2 1 6 6 C 1.55155 * 100.90885 * 35.39141 * 5 4 2 7 7 C 1.52945 * 108.96000 * 318.56064 * 6 5 4 8 8 H 1.09002 * 108.88828 * 269.30617 * 7 6 5 9 9 N 1.46500 * 108.88655 * 150.75233 * 7 6 5 10 10 C 1.36935 * 119.99917 * 84.27963 * 9 7 6 11 11 H 1.07999 * 120.00197 * 359.97438 * 10 9 7 12 12 C 1.38810 * 120.00037 * 179.97438 * 10 9 7 13 13 N 1.31614 * 119.99954 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99990 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47173 * 60.00141 * 14 12 10 16 16 H 1.48507 * 109.47069 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47264 * 299.99906 * 14 12 10 18 18 H 1.08995 * 109.47011 * 297.77301 * 1 2 3 19 19 H 1.09005 * 109.46661 * 57.76975 * 1 2 3 20 20 H 1.08996 * 109.47134 * 177.77314 * 1 2 3 21 21 H 1.09000 * 111.13302 * 277.47898 * 5 4 2 22 22 H 1.08999 * 111.13435 * 153.29578 * 5 4 2 23 23 H 1.08996 * 109.60616 * 198.63017 * 6 5 4 24 24 H 1.09006 * 109.60599 * 78.48816 * 6 5 4 25 25 H 0.97000 * 120.00151 * 264.27682 * 9 7 6 26 26 H 0.97001 * 120.00240 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 16 2.1639 -0.9131 -1.4550 5 6 3.5192 -1.7754 -0.5580 6 6 2.8505 -2.0185 0.8208 7 6 2.0643 -0.7686 1.2192 8 1 2.7159 -0.1101 1.7936 9 7 0.9337 -1.1677 2.0609 10 6 1.1124 -1.3497 3.4063 11 1 2.0870 -1.1995 3.8468 12 6 0.0410 -1.7274 4.2040 13 7 -1.1465 -1.9111 3.6671 14 14 0.2847 -1.9750 6.0394 15 1 0.7582 -0.7076 6.6513 16 1 -1.0039 -2.3740 6.6605 17 1 1.2936 -3.0410 6.2655 18 1 -0.3633 0.4788 0.9092 19 1 -0.3633 0.5481 -0.8694 20 1 -0.3633 -1.0268 -0.0399 21 1 4.3963 -1.1354 -0.4619 22 1 3.7739 -2.7178 -1.0427 23 1 3.6172 -2.2220 1.5683 24 1 2.1736 -2.8704 0.7539 25 1 0.0584 -1.3031 1.6653 26 1 -1.8952 -2.1754 4.2244 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306740482.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:20 Heat of formation + Delta-G solvation = 9.837643 kcal Electronic energy + Delta-G solvation = -9931.870377 eV Core-core repulsion = 8136.948917 eV Total energy + Delta-G solvation = -1794.921460 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.09648 -32.88111 -31.43096 -29.65841 -25.55359 -23.52258 -22.64714 -18.98408 -17.52804 -16.14900 -15.06780 -14.53969 -14.02717 -13.63785 -13.00507 -12.71252 -12.16867 -11.93393 -11.41956 -10.98429 -10.85143 -10.72680 -10.57635 -10.20265 -10.11183 -9.65713 -9.37990 -8.97143 -7.33857 -7.03898 -5.82675 -3.12306 2.29709 2.76104 3.40547 3.45210 3.46090 4.53937 5.11095 5.24681 5.42754 5.44114 5.54796 5.67548 5.74966 6.06195 6.18298 6.27760 6.33356 6.47226 6.62889 6.81354 6.95903 7.63759 8.35607 9.47445 10.02210 10.38134 11.39634 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.068896 B = 0.011348 C = 0.010297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.314914 B = 2466.832650 C = 2718.473325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.034 4.034 3 H 0.088 0.912 4 S -0.326 6.326 5 C -0.065 4.065 6 C -0.140 4.140 7 C 0.170 3.830 8 H 0.055 0.945 9 N -0.720 5.720 10 C -0.247 4.247 11 H 0.069 0.931 12 C -0.010 4.010 13 N -0.931 5.931 14 Si 0.908 3.092 15 H -0.286 1.286 16 H -0.290 1.290 17 H -0.286 1.286 18 H 0.082 0.918 19 H 0.047 0.953 20 H 0.069 0.931 21 H 0.082 0.918 22 H 0.094 0.906 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.392 0.608 26 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.376 2.031 -6.296 9.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.163 4.163 3 H 0.107 0.893 4 S -0.101 6.101 5 C -0.213 4.213 6 C -0.182 4.182 7 C 0.058 3.942 8 H 0.073 0.927 9 N -0.365 5.365 10 C -0.378 4.378 11 H 0.087 0.913 12 C -0.206 4.206 13 N -0.579 5.579 14 Si 0.739 3.261 15 H -0.212 1.212 16 H -0.216 1.216 17 H -0.213 1.213 18 H 0.101 0.899 19 H 0.066 0.934 20 H 0.088 0.912 21 H 0.100 0.900 22 H 0.113 0.887 23 H 0.089 0.911 24 H 0.098 0.902 25 H 0.230 0.770 26 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.037 1.997 -7.264 9.654 hybrid contribution 0.267 -0.237 2.061 2.091 sum 6.304 1.760 -5.203 8.361 Atomic orbital electron populations 1.21677 0.91999 1.03199 1.01864 1.23933 0.99915 0.99907 0.92561 0.89323 1.87476 1.41378 1.59827 1.21401 1.24233 0.97117 1.01735 0.98249 1.23213 0.99660 1.01977 0.93355 1.20733 0.90662 0.92589 0.90257 0.92724 1.42859 1.07246 1.81722 1.04650 1.19222 0.95105 1.39415 0.84031 0.91272 1.24744 0.95546 1.02196 0.98137 1.69645 0.99950 1.53401 1.34887 0.86260 0.76695 0.77933 0.85228 1.21221 1.21628 1.21253 0.89895 0.93407 0.91180 0.89967 0.88702 0.91115 0.90238 0.76973 0.93311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 7.89 37.16 0.29 -2.05 15 2 C -0.03 -0.60 3.90 -26.36 -0.10 -0.70 15 3 H 0.09 1.45 8.14 -51.93 -0.42 1.03 15 4 S -0.33 -5.53 22.64 -107.50 -2.43 -7.97 15 5 C -0.06 -0.96 7.52 38.30 0.29 -0.68 15 6 C -0.14 -2.51 5.95 -25.62 -0.15 -2.66 15 7 C 0.17 3.37 3.25 -67.59 -0.22 3.15 15 8 H 0.05 1.09 8.06 -51.93 -0.42 0.67 15 9 N -0.72 -17.60 4.40 -53.10 -0.23 -17.83 15 10 C -0.25 -6.68 9.89 -15.06 -0.15 -6.83 15 11 H 0.07 1.81 7.83 -52.49 -0.41 1.40 15 12 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 15 13 N -0.93 -27.56 13.06 55.49 0.72 -26.84 15 14 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 15 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 18 H 0.08 1.64 7.50 -51.93 -0.39 1.25 15 19 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 20 H 0.07 1.38 7.12 -51.93 -0.37 1.01 15 21 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 22 H 0.09 1.26 8.14 -51.93 -0.42 0.84 15 23 H 0.07 1.22 8.14 -51.93 -0.42 0.79 15 24 H 0.08 1.59 8.03 -51.93 -0.42 1.17 15 25 H 0.39 10.06 4.90 -40.82 -0.20 9.86 15 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 LS Contribution 227.33 15.07 3.43 3.43 Total: -1.00 -28.69 227.33 -7.13 -35.83 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -3.45 Total: 6.55 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -0.14 Total: -10.14 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.49 Total: -44.67 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: -5.53 SS G_CDS: -2.43 Total: -7.97 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -28.69 -7.13 -35.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306740482.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.664 kcal (2) G-P(sol) polarization free energy of solvation -28.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds