Wall clock time and date at job start Mon Mar 30 2020 01:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99791 * 2 1 4 4 H 1.48491 * 109.47539 * 359.97438 * 3 2 1 5 5 H 1.48505 * 109.47036 * 239.99401 * 3 2 1 6 6 H 1.48499 * 109.47087 * 119.99900 * 3 2 1 7 7 C 1.38804 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99935 * 152.15101 * 7 2 1 9 9 N 1.36931 * 120.00395 * 332.15329 * 7 2 1 10 10 C 1.43662 * 120.55230 * 325.82930 * 9 7 2 11 11 C 1.54005 * 116.50147 * 269.27682 * 10 9 7 12 12 N 1.48816 * 110.60829 * 318.31195 * 11 10 9 13 13 C 1.43912 * 112.05357 * 320.92886 * 12 11 10 14 14 C 1.52471 * 105.41881 * 98.70411 * 13 12 11 15 15 H 1.09003 * 108.43463 * 30.76089 * 14 13 12 16 16 O 1.42901 * 108.55665 * 148.45013 * 14 13 12 17 17 C 1.46647 * 114.11326 * 269.64943 * 14 13 12 18 18 H 0.96995 * 120.00227 * 174.21242 * 1 2 3 19 19 H 1.08993 * 108.13765 * 30.87799 * 10 9 7 20 20 H 1.08994 * 108.14126 * 147.40262 * 10 9 7 21 21 H 1.09004 * 109.32567 * 197.98982 * 11 10 9 22 22 H 1.08995 * 109.17915 * 78.54557 * 11 10 9 23 23 H 1.00904 * 111.00125 * 196.20424 * 12 11 10 24 24 H 1.09007 * 110.24381 * 339.73215 * 13 12 11 25 25 H 1.08998 * 110.37133 * 217.74752 * 13 12 11 26 26 H 0.96696 * 113.99641 * 304.55884 * 16 14 13 27 27 H 1.09005 * 109.95136 * 298.76795 * 17 14 13 28 28 H 1.09002 * 109.95018 * 177.50493 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1041 1.6964 -1.2125 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 2.9965 -1.2565 -0.4364 9 7 1.4445 -2.3191 0.5549 10 6 0.5888 -2.2107 1.7038 11 6 1.2700 -2.3189 3.0807 12 7 2.2955 -3.3973 3.0745 13 6 1.8646 -4.5484 2.3259 14 6 2.5213 -4.4105 0.9568 15 1 3.4712 -3.8903 1.0808 16 8 2.7842 -5.7185 0.4447 17 6 1.7133 -3.6790 -0.0243 18 1 -0.4850 -0.8357 -0.0847 19 1 0.0791 -1.2484 1.6576 20 1 -0.1677 -2.9927 1.6385 21 1 0.5187 -2.5421 3.8383 22 1 1.7489 -1.3692 3.3189 23 1 2.5557 -3.6543 4.0149 24 1 0.7792 -4.5483 2.2254 25 1 2.1976 -5.4645 2.8136 26 1 3.3155 -6.2718 1.0335 27 1 0.7728 -4.2026 -0.1961 28 1 2.2628 -3.5824 -0.9608 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307084246.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:35 Heat of formation + Delta-G solvation = -40.431008 kcal Electronic energy + Delta-G solvation = -12229.352932 eV Core-core repulsion = 10087.217451 eV Total energy + Delta-G solvation = -2142.135481 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.23264 -37.35712 -35.96489 -33.31358 -31.58129 -28.44477 -26.69096 -25.25814 -21.71957 -21.41973 -19.41056 -18.33545 -17.43133 -16.57295 -16.08492 -15.54551 -15.09023 -14.92901 -14.78724 -14.49176 -13.57663 -12.98406 -12.67383 -12.59476 -12.39737 -11.96829 -11.89930 -11.76223 -11.36517 -10.90145 -10.50644 -9.28752 -8.95881 -8.20565 -5.53435 1.58828 1.65641 1.85788 2.57745 2.96285 3.20877 3.47573 3.91964 3.98034 4.04194 4.22506 4.37891 4.42340 4.50153 4.66493 4.92906 4.96492 5.19736 5.22600 5.31111 5.84639 6.07875 6.36603 6.63403 6.93576 7.03169 7.72182 8.17272 8.91115 Molecular weight = 186.11amu Principal moments of inertia in cm(-1) A = 0.051603 B = 0.014097 C = 0.012947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.476475 B = 1985.743787 C = 2162.063119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.067 4.067 3 Si 1.113 2.887 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.353 4.353 8 H 0.036 0.964 9 N -0.588 5.588 10 C 0.136 3.864 11 C 0.047 3.953 12 N -0.688 5.688 13 C 0.047 3.953 14 C 0.108 3.892 15 H 0.041 0.959 16 O -0.589 6.589 17 C 0.141 3.859 18 H 0.254 0.746 19 H 0.051 0.949 20 H 0.021 0.979 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.349 0.651 24 H 0.037 0.963 25 H 0.101 0.899 26 H 0.391 0.609 27 H 0.030 0.970 28 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.001 -7.698 6.870 11.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.264 4.264 3 Si 0.937 3.063 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.483 4.483 8 H 0.054 0.946 9 N -0.312 5.312 10 C 0.008 3.992 11 C -0.084 4.084 12 N -0.321 5.321 13 C -0.083 4.083 14 C 0.047 3.953 15 H 0.059 0.941 16 O -0.395 6.395 17 C 0.017 3.983 18 H 0.064 0.936 19 H 0.069 0.931 20 H 0.039 0.961 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.168 0.832 24 H 0.055 0.945 25 H 0.119 0.881 26 H 0.240 0.760 27 H 0.048 0.952 28 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.820 -5.592 5.868 8.961 hybrid contribution -0.286 -2.175 0.777 2.328 sum 3.535 -7.768 6.645 10.816 Atomic orbital electron populations 1.70901 1.07622 1.29209 1.48652 1.27221 0.96379 1.04748 0.98066 0.82899 0.74017 0.72102 0.77329 1.21327 1.20283 1.20633 1.19983 0.98411 0.90396 1.39464 0.94572 1.43833 1.57993 1.01473 1.27934 1.20480 0.92039 1.00228 0.86454 1.22977 0.93254 0.94495 0.97711 1.59729 1.42864 1.09843 1.19622 1.21962 0.98426 0.93507 0.94445 1.21207 0.98229 0.82335 0.93550 0.94059 1.86478 1.76388 1.26262 1.50390 1.20304 0.96957 0.85843 0.95228 0.93649 0.93114 0.96087 0.93130 0.92927 0.83202 0.94508 0.88094 0.75981 0.95198 0.93397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.13 12.19 21.65 0.26 -55.87 15 2 C -0.07 -3.82 4.82 84.86 0.41 -3.41 15 3 Si 1.11 51.45 30.00 68.60 2.06 53.50 15 4 H -0.29 -13.30 7.11 99.48 0.71 -12.59 15 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 7 C -0.35 -20.42 9.44 84.03 0.79 -19.63 15 8 H 0.04 2.16 7.97 -2.91 -0.02 2.14 15 9 N -0.59 -30.66 2.51 -708.26 -1.78 -32.43 15 10 C 0.14 6.48 4.41 87.24 0.38 6.86 15 11 C 0.05 1.81 7.04 86.27 0.61 2.42 15 12 N -0.69 -22.96 6.20 -515.26 -3.19 -26.15 15 13 C 0.05 1.48 5.90 86.68 0.51 1.99 15 14 C 0.11 4.04 3.06 28.45 0.09 4.13 15 15 H 0.04 1.74 7.86 -2.39 -0.02 1.72 15 16 O -0.59 -18.80 13.21 -148.98 -1.97 -20.77 15 17 C 0.14 6.48 5.76 83.68 0.48 6.96 15 18 H 0.25 15.80 7.21 -92.71 -0.67 15.14 15 19 H 0.05 2.77 5.15 -2.39 -0.01 2.76 15 20 H 0.02 0.95 6.89 -2.39 -0.02 0.94 15 21 H 0.05 1.65 8.14 -2.39 -0.02 1.63 15 22 H 0.05 2.20 8.14 -2.39 -0.02 2.18 15 23 H 0.35 9.03 8.89 -89.69 -0.80 8.23 15 24 H 0.04 1.26 6.13 -2.38 -0.01 1.24 15 25 H 0.10 2.31 7.85 -2.39 -0.02 2.29 15 26 H 0.39 8.11 8.83 -74.06 -0.65 7.45 15 27 H 0.03 1.36 8.14 -2.38 -0.02 1.34 15 28 H 0.05 2.32 7.99 -2.39 -0.02 2.30 15 Total: -1.00 -67.06 225.03 -1.52 -68.59 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -0.18 Total: 13.81 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 3.27 Total: -0.68 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -4.71 Total: -114.45 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -1.97 Total: -20.77 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 2.06 Total: 53.50 kcal Total: -67.06 -1.52 -68.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307084246.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.155 kcal (2) G-P(sol) polarization free energy of solvation -67.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds