Wall clock time and date at job start Mon Mar 30 2020 02:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99473 * 2 1 4 4 H 1.48499 * 109.47524 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46613 * 119.99859 * 3 2 1 6 6 H 1.48494 * 109.47005 * 239.99761 * 3 2 1 7 7 C 1.38807 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99758 * 151.67370 * 7 2 1 9 9 N 1.36940 * 119.99883 * 331.67742 * 7 2 1 10 10 C 1.50172 * 120.53368 * 146.07950 * 9 7 2 11 11 C 1.46233 * 107.53254 * 109.56408 * 10 9 7 12 12 C 1.52524 * 114.28039 * 58.40443 * 11 10 9 13 13 C 1.50125 * 105.41777 * 270.59203 * 12 11 10 14 14 C 1.54846 * 110.81628 * 97.67783 * 13 12 11 15 15 H 1.09010 * 109.35415 * 81.34427 * 14 13 12 16 16 F 1.39902 * 109.36075 * 201.06507 * 14 13 12 17 17 C 1.43427 * 120.53417 * 325.79406 * 9 7 2 18 18 H 0.97001 * 119.99499 * 174.23343 * 1 2 3 19 19 H 1.09001 * 109.83830 * 229.06680 * 10 9 7 20 20 H 1.08990 * 109.84728 * 350.05063 * 10 9 7 21 21 H 1.09005 * 108.52407 * 179.64419 * 11 10 9 22 22 H 1.09002 * 108.52141 * 297.32132 * 11 10 9 23 23 H 1.09000 * 110.24995 * 29.56711 * 12 11 10 24 24 H 1.09005 * 110.25483 * 151.47593 * 12 11 10 25 25 H 1.08989 * 109.21368 * 218.02598 * 13 12 11 26 26 H 1.09001 * 109.20504 * 337.38553 * 13 12 11 27 27 H 1.09002 * 108.16596 * 33.31132 * 17 9 7 28 28 H 1.09000 * 108.15968 * 149.88003 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1038 1.6965 1.2126 6 1 3.1038 1.6965 -1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 2.9934 -1.2578 -0.4444 9 7 1.4486 -2.3173 0.5616 10 6 1.7130 -3.6782 -0.0155 11 6 2.5647 -4.3996 0.9293 12 6 1.9668 -4.5494 2.3245 13 6 2.4137 -3.3334 3.0830 14 6 1.3066 -2.2507 3.0886 15 1 0.5759 -2.4852 3.8628 16 9 1.8799 -1.0026 3.3547 17 6 0.6032 -2.2049 1.7148 18 1 -0.4849 -0.8358 -0.0844 19 1 0.7724 -4.2128 -0.1485 20 1 2.2231 -3.5811 -0.9738 21 1 2.7618 -5.3939 0.5285 22 1 3.5125 -3.8683 1.0165 23 1 0.8787 -4.5797 2.2674 24 1 2.3441 -5.4540 2.8016 25 1 2.6442 -3.6159 4.1100 26 1 3.3094 -2.9269 2.6133 27 1 0.0605 -1.2620 1.6477 28 1 -0.1267 -3.0138 1.6810 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307233100.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:23 Heat of formation + Delta-G solvation = -36.697789 kcal Electronic energy + Delta-G solvation = -12446.221891 eV Core-core repulsion = 10218.902422 eV Total energy + Delta-G solvation = -2227.319469 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.107 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -46.49424 -37.81118 -33.89127 -31.29644 -30.27095 -26.10378 -24.22028 -22.97645 -20.08278 -19.26467 -17.20574 -15.43363 -15.29893 -15.01864 -14.10720 -13.61076 -13.27283 -12.74200 -12.70329 -12.41938 -11.70917 -11.45769 -11.08709 -10.61972 -10.35757 -10.26949 -9.98390 -9.91096 -9.78942 -9.62323 -9.27081 -8.30176 -6.79927 -5.97573 -3.30848 3.54103 3.63568 3.77951 4.61675 5.07235 5.18398 5.31050 5.43244 5.50971 5.81851 5.85881 5.90647 6.04797 6.17761 6.27822 6.43946 6.55249 6.61996 6.71567 6.83132 6.99884 7.02101 7.26970 8.09213 8.63369 9.12771 9.86464 10.30494 11.19078 Molecular weight = 187.11amu Principal moments of inertia in cm(-1) A = 0.045165 B = 0.017260 C = 0.014961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.799918 B = 1621.854037 C = 1871.124679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.013 4.013 3 Si 1.059 2.941 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.293 1.293 7 C -0.350 4.350 8 H 0.050 0.950 9 N -0.582 5.582 10 C 0.133 3.867 11 C -0.132 4.132 12 C -0.108 4.108 13 C -0.132 4.132 14 C 0.065 3.935 15 H 0.061 0.939 16 F -0.214 7.214 17 C 0.116 3.884 18 H 0.268 0.732 19 H 0.027 0.973 20 H 0.060 0.940 21 H 0.041 0.959 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.554 -7.192 4.183 8.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.216 4.216 3 Si 0.888 3.112 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.220 1.220 7 C -0.479 4.479 8 H 0.067 0.933 9 N -0.303 5.303 10 C 0.009 3.991 11 C -0.171 4.171 12 C -0.146 4.146 13 C -0.170 4.170 14 C 0.025 3.975 15 H 0.079 0.921 16 F -0.195 7.195 17 C -0.013 4.013 18 H 0.079 0.921 19 H 0.046 0.954 20 H 0.079 0.921 21 H 0.060 0.940 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.403 -5.495 4.195 7.319 hybrid contribution 0.359 -1.693 0.083 1.733 sum 2.762 -7.188 4.278 8.809 Atomic orbital electron populations 1.70794 1.06982 1.30058 1.46174 1.25839 0.96213 1.01654 0.97930 0.83635 0.75140 0.76116 0.76299 1.21111 1.21664 1.22012 1.19783 0.99298 0.89255 1.39548 0.93268 1.43885 1.58488 1.01906 1.25999 1.20445 0.96438 0.86822 0.95351 1.20967 1.00924 0.99053 0.96106 1.20885 1.01038 0.96509 0.96167 1.22014 0.99943 0.95717 0.99352 1.23207 0.94517 0.79211 1.00572 0.92071 1.92765 1.86793 1.44681 1.95303 1.20977 0.92740 1.02601 0.85030 0.92146 0.95440 0.92116 0.93994 0.92160 0.91579 0.92517 0.93457 0.90590 0.89957 0.94794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 12.19 55.49 0.68 -26.64 15 2 C -0.01 -0.38 4.83 -17.43 -0.08 -0.47 15 3 Si 1.06 26.35 30.00 -169.99 -5.10 21.25 15 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 15 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 7 C -0.35 -9.95 9.43 -15.06 -0.14 -10.09 15 8 H 0.05 1.42 7.97 -52.49 -0.42 1.01 15 9 N -0.58 -14.62 2.36 -175.41 -0.41 -15.03 15 10 C 0.13 2.77 6.12 -5.20 -0.03 2.74 15 11 C -0.13 -2.33 5.20 -30.19 -0.16 -2.49 15 12 C -0.11 -1.77 5.76 -28.40 -0.16 -1.93 15 13 C -0.13 -2.43 5.39 -27.19 -0.15 -2.57 15 14 C 0.06 1.36 4.33 -25.02 -0.11 1.25 15 15 H 0.06 1.11 8.14 -51.92 -0.42 0.69 15 16 F -0.21 -5.28 17.09 2.25 0.04 -5.25 15 17 C 0.12 2.76 4.19 -4.93 -0.02 2.73 15 18 H 0.27 8.11 7.22 -40.82 -0.29 7.82 15 19 H 0.03 0.54 8.13 -51.93 -0.42 0.12 15 20 H 0.06 1.28 7.99 -51.93 -0.42 0.86 15 21 H 0.04 0.63 8.14 -51.93 -0.42 0.21 15 22 H 0.06 1.15 6.92 -51.93 -0.36 0.79 15 23 H 0.07 1.09 6.28 -51.93 -0.33 0.76 15 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 25 H 0.05 0.75 8.14 -51.94 -0.42 0.33 15 26 H 0.08 1.56 6.82 -51.93 -0.35 1.20 15 27 H 0.08 2.26 5.13 -51.93 -0.27 1.99 15 28 H 0.03 0.73 6.89 -51.93 -0.36 0.37 15 LS Contribution 224.14 15.07 3.38 3.38 Total: -1.00 -30.62 224.14 -5.98 -36.59 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: -3.70 Total: -3.48 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -0.85 Total: -10.82 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.26 Total: -41.67 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 0.04 Total: -5.25 kcal Atomic # 14 Polarization: 26.35 SS G_CDS: -5.10 Total: 21.25 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -30.62 -5.98 -36.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307233100.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.104 kcal (2) G-P(sol) polarization free energy of solvation -30.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds