Wall clock time and date at job start Mon Mar 30 2020 02:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99473 * 2 1 4 4 H 1.48499 * 109.47524 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46613 * 119.99859 * 3 2 1 6 6 H 1.48494 * 109.47005 * 239.99761 * 3 2 1 7 7 C 1.38807 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99758 * 151.67370 * 7 2 1 9 9 N 1.36940 * 119.99883 * 331.67742 * 7 2 1 10 10 C 1.50172 * 120.53368 * 146.07950 * 9 7 2 11 11 C 1.46233 * 107.53254 * 109.56408 * 10 9 7 12 12 C 1.52524 * 114.28039 * 58.40443 * 11 10 9 13 13 C 1.50125 * 105.41777 * 270.59203 * 12 11 10 14 14 C 1.54846 * 110.81628 * 97.67783 * 13 12 11 15 15 H 1.09010 * 109.35415 * 81.34427 * 14 13 12 16 16 F 1.39902 * 109.36075 * 201.06507 * 14 13 12 17 17 C 1.43427 * 120.53417 * 325.79406 * 9 7 2 18 18 H 0.97001 * 119.99499 * 174.23343 * 1 2 3 19 19 H 1.09001 * 109.83830 * 229.06680 * 10 9 7 20 20 H 1.08990 * 109.84728 * 350.05063 * 10 9 7 21 21 H 1.09005 * 108.52407 * 179.64419 * 11 10 9 22 22 H 1.09002 * 108.52141 * 297.32132 * 11 10 9 23 23 H 1.09000 * 110.24995 * 29.56711 * 12 11 10 24 24 H 1.09005 * 110.25483 * 151.47593 * 12 11 10 25 25 H 1.08989 * 109.21368 * 218.02598 * 13 12 11 26 26 H 1.09001 * 109.20504 * 337.38553 * 13 12 11 27 27 H 1.09002 * 108.16596 * 33.31132 * 17 9 7 28 28 H 1.09000 * 108.15968 * 149.88003 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1038 1.6965 1.2126 6 1 3.1038 1.6965 -1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 2.9934 -1.2578 -0.4444 9 7 1.4486 -2.3173 0.5616 10 6 1.7130 -3.6782 -0.0155 11 6 2.5647 -4.3996 0.9293 12 6 1.9668 -4.5494 2.3245 13 6 2.4137 -3.3334 3.0830 14 6 1.3066 -2.2507 3.0886 15 1 0.5759 -2.4852 3.8628 16 9 1.8799 -1.0026 3.3547 17 6 0.6032 -2.2049 1.7148 18 1 -0.4849 -0.8358 -0.0844 19 1 0.7724 -4.2128 -0.1485 20 1 2.2231 -3.5811 -0.9738 21 1 2.7618 -5.3939 0.5285 22 1 3.5125 -3.8683 1.0165 23 1 0.8787 -4.5797 2.2674 24 1 2.3441 -5.4540 2.8016 25 1 2.6442 -3.6159 4.1100 26 1 3.3094 -2.9269 2.6133 27 1 0.0605 -1.2620 1.6477 28 1 -0.1267 -3.0138 1.6810 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307233100.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:23 Heat of formation + Delta-G solvation = -55.181727 kcal Electronic energy + Delta-G solvation = -12447.023415 eV Core-core repulsion = 10218.902422 eV Total energy + Delta-G solvation = -2228.120993 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.107 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.31845 -39.47108 -35.74826 -32.98745 -32.17212 -28.01854 -25.80052 -24.88929 -21.65001 -21.01366 -19.23418 -17.11855 -17.00217 -16.73612 -15.97666 -15.53235 -15.07856 -14.42588 -14.30181 -14.16190 -13.58334 -13.10741 -12.66923 -12.53872 -12.20659 -11.98531 -11.85522 -11.56683 -11.50785 -11.19269 -11.04719 -10.42697 -8.89307 -8.14262 -5.50272 1.53008 1.63469 1.80214 2.61543 3.15588 3.44650 3.68750 3.88122 3.97949 4.20422 4.30041 4.41243 4.41485 4.69744 4.79750 4.95021 4.98676 5.07735 5.29381 5.32344 5.39406 5.46294 5.55262 5.87507 6.40594 7.08220 7.77589 8.20603 8.94629 Molecular weight = 187.11amu Principal moments of inertia in cm(-1) A = 0.045165 B = 0.017260 C = 0.014961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.799918 B = 1621.854037 C = 1871.124679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.062 4.062 3 Si 1.099 2.901 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.272 1.272 7 C -0.353 4.353 8 H 0.037 0.963 9 N -0.600 5.600 10 C 0.132 3.868 11 C -0.128 4.128 12 C -0.102 4.102 13 C -0.125 4.125 14 C 0.055 3.945 15 H 0.096 0.904 16 F -0.239 7.239 17 C 0.116 3.884 18 H 0.256 0.744 19 H 0.041 0.959 20 H 0.049 0.951 21 H 0.076 0.924 22 H 0.041 0.959 23 H 0.068 0.932 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.042 0.958 28 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.120 -8.792 5.037 10.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.260 4.260 3 Si 0.924 3.076 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.197 1.197 7 C -0.483 4.483 8 H 0.054 0.946 9 N -0.322 5.322 10 C 0.009 3.991 11 C -0.167 4.167 12 C -0.139 4.139 13 C -0.163 4.163 14 C 0.016 3.984 15 H 0.114 0.886 16 F -0.220 7.220 17 C -0.013 4.013 18 H 0.066 0.934 19 H 0.060 0.940 20 H 0.068 0.932 21 H 0.095 0.905 22 H 0.059 0.941 23 H 0.087 0.913 24 H 0.113 0.887 25 H 0.096 0.904 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.979 -7.129 5.047 9.229 hybrid contribution 0.167 -1.281 -0.187 1.305 sum 3.146 -8.409 4.859 10.209 Atomic orbital electron populations 1.70890 1.07690 1.29317 1.48668 1.26943 0.96369 1.04548 0.98136 0.83084 0.74387 0.73059 0.77058 1.21366 1.21611 1.19713 1.19915 0.98737 0.90827 1.38803 0.94559 1.44107 1.58494 1.02723 1.26882 1.20604 0.97630 0.85116 0.95758 1.20846 0.99167 1.00029 0.96621 1.20915 1.01171 0.96969 0.94835 1.21971 0.97548 0.95372 1.01370 1.23461 0.96243 0.78975 0.99687 0.88637 1.92714 1.87283 1.46688 1.95351 1.20951 0.93000 1.01228 0.86165 0.93426 0.94034 0.93240 0.90521 0.94055 0.91338 0.88703 0.90378 0.93344 0.94054 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.30 12.19 21.65 0.26 -57.04 15 2 C -0.06 -3.63 4.83 84.86 0.41 -3.22 15 3 Si 1.10 53.83 30.00 68.60 2.06 55.89 15 4 H -0.29 -14.11 7.11 99.48 0.71 -13.40 15 5 H -0.29 -14.01 7.11 99.48 0.71 -13.30 15 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 15 7 C -0.35 -20.34 9.43 84.03 0.79 -19.55 15 8 H 0.04 2.14 7.97 -2.91 -0.02 2.12 15 9 N -0.60 -30.07 2.36 -708.87 -1.68 -31.75 15 10 C 0.13 5.30 6.12 83.58 0.51 5.81 15 11 C -0.13 -4.16 5.20 28.35 0.15 -4.01 15 12 C -0.10 -2.89 5.76 29.51 0.17 -2.72 15 13 C -0.12 -4.21 5.39 30.30 0.16 -4.04 15 14 C 0.06 2.24 4.33 31.70 0.14 2.38 15 15 H 0.10 3.20 8.14 -2.38 -0.02 3.18 15 16 F -0.24 -11.72 17.09 44.97 0.77 -10.95 15 17 C 0.12 5.43 4.19 87.43 0.37 5.79 15 18 H 0.26 15.95 7.22 -92.71 -0.67 15.29 15 19 H 0.04 1.55 8.13 -2.39 -0.02 1.53 15 20 H 0.05 2.05 7.99 -2.39 -0.02 2.03 15 21 H 0.08 1.99 8.14 -2.38 -0.02 1.97 15 22 H 0.04 1.51 6.92 -2.39 -0.02 1.49 15 23 H 0.07 1.95 6.28 -2.39 -0.02 1.94 15 24 H 0.09 2.05 8.14 -2.38 -0.02 2.03 15 25 H 0.08 2.16 8.14 -2.39 -0.02 2.14 15 26 H 0.05 1.91 6.82 -2.39 -0.02 1.89 15 27 H 0.04 2.32 5.13 -2.39 -0.01 2.31 15 28 H 0.05 2.27 6.89 -2.39 -0.02 2.26 15 Total: -1.00 -66.80 224.14 5.35 -61.45 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: 1.24 Total: 1.96 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 2.70 Total: -19.56 kcal Atomic # 7 Polarization: -87.37 SS G_CDS: -1.41 Total: -88.78 kcal Atomic # 9 Polarization: -11.72 SS G_CDS: 0.77 Total: -10.95 kcal Atomic # 14 Polarization: 53.83 SS G_CDS: 2.06 Total: 55.89 kcal Total: -66.80 5.35 -61.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307233100.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.270 kcal (2) G-P(sol) polarization free energy of solvation -66.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds