Wall clock time and date at job start Mon Mar 30 2020 02:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99937 * 2 1 4 4 H 1.48501 * 109.46602 * 239.99437 * 3 2 1 5 5 H 1.48496 * 109.46844 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46930 * 119.99407 * 3 2 1 7 7 C 1.38811 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00190 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99774 * 0.02562 * 7 2 1 10 10 C 1.47020 * 125.65236 * 359.95644 * 9 7 2 11 11 C 1.54316 * 107.27568 * 178.97773 * 10 9 7 12 12 H 1.09003 * 110.72351 * 96.16743 * 11 10 9 13 13 O 1.42899 * 110.72448 * 219.44573 * 11 10 9 14 14 C 1.55158 * 102.94139 * 337.80546 * 11 10 9 15 15 H 1.08998 * 111.00511 * 277.42784 * 14 11 10 16 16 C 1.52997 * 111.03856 * 153.58832 * 14 11 10 17 17 O 1.42908 * 109.47246 * 181.32879 * 16 14 11 18 18 C 1.47422 * 125.64571 * 179.97438 * 9 7 2 19 19 H 0.97006 * 120.00279 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.88493 * 59.55525 * 10 9 7 21 21 H 1.09005 * 110.00581 * 298.46835 * 10 9 7 22 22 H 0.96707 * 113.99253 * 293.52308 * 13 11 10 23 23 H 1.08994 * 109.47315 * 301.33056 * 16 14 11 24 24 H 1.09007 * 109.46954 * 61.33678 * 16 14 11 25 25 H 0.96700 * 113.99709 * 179.97438 * 17 16 14 26 26 H 1.08998 * 110.36873 * 85.25284 * 18 9 7 27 27 H 1.09005 * 110.36491 * 322.92691 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1375 -2.5328 0.0009 11 6 -0.4485 -4.0441 -0.0255 12 1 -0.6315 -4.4179 0.9819 13 8 -1.5631 -4.3162 -0.8774 14 6 0.8517 -4.6562 -0.6105 15 1 0.8564 -4.5966 -1.6988 16 6 1.0375 -6.1010 -0.1425 17 8 2.2577 -6.6208 -0.6744 18 6 1.9334 -3.7311 0.0005 19 1 -0.4851 0.8401 -0.0004 20 1 -0.5579 -2.0523 -0.8826 21 1 -0.5565 -2.0838 0.9015 22 1 -2.4007 -3.9547 -0.5566 23 1 1.0751 -6.1282 0.9464 24 1 0.2014 -6.7066 -0.4926 25 1 2.4408 -7.5350 -0.4177 26 1 2.1669 -4.0418 1.0189 27 1 2.8326 -3.7405 -0.6155 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307294336.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:04 Heat of formation + Delta-G solvation = -75.716543 kcal Electronic energy + Delta-G solvation = -11936.412823 eV Core-core repulsion = 9695.028584 eV Total energy + Delta-G solvation = -2241.384238 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.37333 -36.21908 -34.89956 -32.31395 -29.67991 -27.47241 -25.29761 -23.21769 -20.32408 -19.65212 -17.31413 -16.68514 -16.50898 -15.22083 -14.55950 -14.08703 -13.75327 -12.96076 -12.53908 -12.27302 -12.16507 -11.21582 -11.09313 -10.98097 -10.75680 -10.50611 -10.05719 -9.76377 -9.73984 -9.63509 -9.19002 -8.60161 -6.82840 -5.69934 -3.03584 3.42919 3.46504 3.48137 4.38049 4.50573 4.86807 5.27546 5.43048 5.52482 5.54332 5.66706 5.84157 6.02732 6.18221 6.33119 6.49530 6.76516 6.97951 7.43285 7.55285 7.79320 7.83666 8.21838 8.26069 9.22465 9.83111 10.48536 11.42069 Molecular weight = 187.10amu Principal moments of inertia in cm(-1) A = 0.056753 B = 0.011719 C = 0.009967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.247168 B = 2388.799044 C = 2808.727428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.010 4.010 3 Si 0.915 3.085 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.080 0.920 9 N -0.605 5.605 10 C 0.153 3.847 11 C 0.080 3.920 12 H 0.054 0.946 13 O -0.567 6.567 14 C -0.095 4.095 15 H 0.088 0.912 16 C 0.090 3.910 17 O -0.570 6.570 18 C 0.147 3.853 19 H 0.253 0.747 20 H 0.057 0.943 21 H 0.045 0.955 22 H 0.375 0.625 23 H 0.043 0.957 24 H 0.044 0.956 25 H 0.372 0.628 26 H 0.020 0.980 27 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.811 -9.856 1.335 9.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.333 5.333 10 C 0.027 3.973 11 C 0.020 3.980 12 H 0.072 0.928 13 O -0.372 6.372 14 C -0.114 4.114 15 H 0.106 0.894 16 C 0.012 3.988 17 O -0.375 6.375 18 C 0.021 3.979 19 H 0.063 0.937 20 H 0.075 0.925 21 H 0.063 0.937 22 H 0.221 0.779 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.217 0.783 26 H 0.037 0.963 27 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.376 -9.307 0.724 9.342 hybrid contribution -0.100 0.634 0.645 0.910 sum -0.476 -8.673 1.369 8.793 Atomic orbital electron populations 1.69934 1.04944 1.25161 1.57312 1.24818 0.95766 0.97754 1.02263 0.86150 0.78414 0.82986 0.77936 1.21107 1.21590 1.21143 1.19068 0.90519 0.82325 1.43656 0.90265 1.44360 1.01316 1.00224 1.87359 1.21791 0.85387 0.88376 1.01708 1.23172 0.85212 0.98207 0.91389 0.92829 1.86435 1.18850 1.80044 1.51871 1.22321 0.95095 0.92108 1.01880 0.89396 1.22160 0.85607 0.94612 0.96438 1.86542 1.42010 1.32384 1.76552 1.21514 0.94529 0.85079 0.96790 0.93711 0.92478 0.93722 0.77868 0.93866 0.93730 0.78255 0.96252 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.71 10.31 55.49 0.57 -27.13 15 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 15 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 15 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 15 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 15 7 C -0.23 -6.59 10.28 -15.06 -0.15 -6.74 15 8 H 0.08 2.20 7.83 -52.49 -0.41 1.79 15 9 N -0.61 -16.29 3.39 -170.09 -0.58 -16.86 15 10 C 0.15 3.83 5.15 -3.07 -0.02 3.81 15 11 C 0.08 1.58 3.80 -24.90 -0.09 1.48 15 12 H 0.05 0.96 8.04 -51.93 -0.42 0.54 15 13 O -0.57 -10.36 13.39 -35.23 -0.47 -10.83 15 14 C -0.09 -1.87 3.05 -88.48 -0.27 -2.14 15 15 H 0.09 1.89 8.14 -51.93 -0.42 1.47 15 16 C 0.09 1.39 6.49 37.16 0.24 1.64 15 17 O -0.57 -8.52 13.51 -35.23 -0.48 -9.00 15 18 C 0.15 3.31 6.56 -2.54 -0.02 3.29 15 19 H 0.25 7.33 8.31 -40.82 -0.34 6.99 15 20 H 0.06 1.60 7.30 -51.93 -0.38 1.22 15 21 H 0.04 1.20 7.50 -51.93 -0.39 0.81 15 22 H 0.37 5.24 9.12 45.56 0.42 5.66 15 23 H 0.04 0.61 8.10 -51.93 -0.42 0.19 15 24 H 0.04 0.64 8.14 -51.92 -0.42 0.21 15 25 H 0.37 3.43 9.12 45.56 0.42 3.85 15 26 H 0.02 0.43 8.00 -51.93 -0.42 0.01 15 27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 15 LS Contribution 230.04 15.07 3.47 3.47 Total: -1.00 -33.32 230.04 -4.92 -38.24 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -2.01 Total: 3.65 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -0.41 Total: 0.95 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: -0.01 Total: -44.00 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.95 Total: -19.83 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -33.32 -4.92 -38.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307294336.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.476 kcal (2) G-P(sol) polarization free energy of solvation -33.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds