Wall clock time and date at job start Mon Mar 30 2020 02:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42892 * 114.00158 * 2 1 4 4 H 1.09005 * 110.83100 * 333.64275 * 3 2 1 5 5 C 1.54994 * 110.90982 * 97.29113 * 3 2 1 6 6 O 1.44380 * 103.49110 * 155.21923 * 5 3 2 7 7 C 1.43739 * 106.97820 * 319.94499 * 6 5 3 8 8 C 1.54106 * 107.29313 * 26.50894 * 7 6 5 9 9 H 1.09000 * 110.48945 * 239.29694 * 8 7 6 10 10 N 1.46502 * 110.48639 * 116.64875 * 8 7 6 11 11 C 1.36942 * 119.99822 * 86.45447 * 10 8 7 12 12 H 1.07991 * 120.00043 * 0.02562 * 11 10 8 13 13 C 1.38810 * 119.99536 * 180.02562 * 11 10 8 14 14 N 1.31616 * 120.00526 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99793 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47355 * 89.99649 * 15 13 11 17 17 H 1.48501 * 109.46897 * 209.99828 * 15 13 11 18 18 H 1.48505 * 109.46776 * 329.99744 * 15 13 11 19 19 H 1.09001 * 109.47283 * 300.00074 * 1 2 3 20 20 H 1.09001 * 109.47123 * 60.00289 * 1 2 3 21 21 H 1.09003 * 109.47326 * 180.02562 * 1 2 3 22 22 H 1.08998 * 110.61564 * 36.72085 * 5 3 2 23 23 H 1.08997 * 110.62119 * 273.72558 * 5 3 2 24 24 H 1.09004 * 109.87903 * 267.08704 * 7 6 5 25 25 H 1.08997 * 110.00609 * 146.00467 * 7 6 5 26 26 H 0.97000 * 119.99906 * 266.45252 * 10 8 7 27 27 H 0.97000 * 120.00788 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3340 2.0308 -0.4523 5 6 2.4031 1.7360 1.4362 6 8 3.4534 2.7034 1.2223 7 6 4.2703 2.2058 0.1494 8 6 3.3791 1.3006 -0.7231 9 1 3.7855 0.2901 -0.7637 10 7 3.2483 1.8568 -2.0721 11 6 4.1851 1.5640 -3.0271 12 1 5.0199 0.9229 -2.7860 13 6 4.0615 2.0914 -4.3052 14 7 3.0437 2.8724 -4.5993 15 14 5.3389 1.6915 -5.6082 16 1 4.9304 0.4672 -6.3426 17 1 5.4475 2.8265 -6.5596 18 1 6.6543 1.4630 -4.9580 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 2.7763 0.8836 2.0038 23 1 1.5556 2.1956 1.9445 24 1 5.1018 1.6284 0.5537 25 1 4.6505 3.0360 -0.4457 26 1 2.4982 2.4323 -2.2888 27 1 2.9575 3.2413 -5.4923 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307299232.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:35 Heat of formation + Delta-G solvation = -97.919780 kcal Electronic energy + Delta-G solvation = -11850.901810 eV Core-core repulsion = 9608.554767 eV Total energy + Delta-G solvation = -2242.347043 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.100 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.70038 -38.04135 -36.27426 -33.35394 -30.61127 -29.11238 -27.32661 -25.77912 -23.30148 -21.93068 -19.40429 -18.02252 -17.62114 -16.72102 -16.28134 -15.87959 -15.73625 -15.17572 -15.01060 -14.47520 -13.63284 -13.21283 -12.97987 -12.71848 -12.62896 -12.40220 -12.15642 -11.85492 -11.72637 -11.10150 -10.87918 -10.40480 -9.09051 -7.98931 -5.30209 1.47607 1.49379 1.57964 2.50223 2.61586 3.12385 3.33487 3.62921 3.84249 3.99518 4.09772 4.34424 4.48449 4.50987 4.58986 4.75390 4.76897 4.83499 4.89251 5.09638 5.47542 5.80740 6.20764 6.23836 7.27895 7.96351 8.22302 9.24246 Molecular weight = 187.10amu Principal moments of inertia in cm(-1) A = 0.048130 B = 0.011245 C = 0.009950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.614241 B = 2489.360683 C = 2813.482081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.391 6.391 3 C 0.054 3.946 4 H 0.071 0.929 5 C 0.036 3.964 6 O -0.391 6.391 7 C 0.034 3.966 8 C 0.139 3.861 9 H 0.067 0.933 10 N -0.727 5.727 11 C -0.249 4.249 12 H 0.079 0.921 13 C -0.072 4.072 14 N -0.969 5.969 15 Si 0.977 3.023 16 H -0.287 1.287 17 H -0.294 1.294 18 H -0.267 1.267 19 H 0.063 0.937 20 H 0.034 0.966 21 H 0.104 0.896 22 H 0.081 0.919 23 H 0.116 0.884 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.374 0.626 27 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.055 -4.178 10.479 11.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.310 6.310 3 C -0.005 4.005 4 H 0.089 0.911 5 C -0.041 4.041 6 O -0.311 6.311 7 C -0.045 4.045 8 C 0.029 3.971 9 H 0.085 0.915 10 N -0.367 5.367 11 C -0.380 4.380 12 H 0.097 0.903 13 C -0.264 4.264 14 N -0.619 5.619 15 Si 0.805 3.195 16 H -0.214 1.214 17 H -0.221 1.221 18 H -0.192 1.192 19 H 0.081 0.919 20 H 0.053 0.947 21 H 0.122 0.878 22 H 0.099 0.901 23 H 0.134 0.866 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.206 0.794 27 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.757 -4.233 10.504 11.656 hybrid contribution 0.048 0.221 -1.214 1.235 sum -2.709 -4.012 9.290 10.476 Atomic orbital electron populations 1.23024 0.79357 1.04115 1.00679 1.87856 1.21683 1.26546 1.94961 1.23884 0.95049 0.85290 0.96323 0.91101 1.23982 0.91444 0.93230 0.95435 1.88812 1.42623 1.45510 1.54120 1.23927 0.94044 0.98621 0.87943 1.21777 0.93635 0.96439 0.85253 0.91494 1.42527 1.29403 1.58055 1.06726 1.19646 1.03273 1.23982 0.91129 0.90292 1.25611 1.00554 1.00419 0.99830 1.69815 1.32845 1.38352 1.20838 0.85095 0.78891 0.76723 0.78758 1.21352 1.22095 1.19183 0.91889 0.94718 0.87781 0.90088 0.86575 0.91218 0.90947 0.79391 0.93839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 10.85 113.37 1.23 1.83 15 2 O -0.39 -13.07 10.46 -148.98 -1.56 -14.63 15 3 C 0.05 1.88 3.34 31.89 0.11 1.98 15 4 H 0.07 2.58 7.43 -2.38 -0.02 2.56 15 5 C 0.04 1.05 7.45 72.66 0.54 1.59 15 6 O -0.39 -13.96 11.52 -148.98 -1.72 -15.68 15 7 C 0.03 1.30 7.50 72.36 0.54 1.84 15 8 C 0.14 5.79 3.46 45.98 0.16 5.95 15 9 H 0.07 2.86 8.05 -2.39 -0.02 2.85 15 10 N -0.73 -37.56 5.09 -318.26 -1.62 -39.18 15 11 C -0.25 -13.92 9.97 84.03 0.84 -13.09 15 12 H 0.08 4.22 7.83 -2.92 -0.02 4.20 15 13 C -0.07 -4.12 5.50 84.86 0.47 -3.65 15 14 N -0.97 -59.35 13.06 21.65 0.28 -59.07 15 15 Si 0.98 46.04 29.55 68.60 2.03 48.07 15 16 H -0.29 -13.29 7.11 99.48 0.71 -12.58 15 17 H -0.29 -13.94 7.11 99.48 0.71 -13.23 15 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 15 19 H 0.06 1.22 8.14 -2.39 -0.02 1.20 15 20 H 0.03 0.92 8.12 -2.39 -0.02 0.90 15 21 H 0.10 2.10 8.14 -2.39 -0.02 2.08 15 22 H 0.08 2.11 8.14 -2.39 -0.02 2.10 15 23 H 0.12 2.68 8.14 -2.39 -0.02 2.66 15 24 H 0.07 2.35 8.14 -2.39 -0.02 2.33 15 25 H 0.07 3.09 7.93 -2.39 -0.02 3.07 15 26 H 0.37 20.67 7.55 -92.71 -0.70 19.97 15 27 H 0.25 14.97 8.31 -92.71 -0.77 14.20 15 Total: -1.00 -64.63 235.01 1.75 -62.88 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 0.46 Total: 21.16 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 3.88 Total: -3.54 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -1.34 Total: -98.25 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -3.28 Total: -30.31 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -64.63 1.75 -62.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307299232.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.041 kcal (2) G-P(sol) polarization free energy of solvation -64.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds