Wall clock time and date at job start Mon Mar 30 2020 02:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36940 * 119.99702 * 2 1 4 4 H 1.08004 * 119.99821 * 152.14621 * 3 2 1 5 5 C 1.38809 * 120.00397 * 331.87774 * 3 2 1 6 6 N 1.31625 * 119.99781 * 347.07339 * 5 3 2 7 7 Si 1.86797 * 120.00302 * 167.06998 * 5 3 2 8 8 H 1.48497 * 109.47120 * 90.00030 * 7 5 3 9 9 H 1.48499 * 109.46992 * 210.00218 * 7 5 3 10 10 H 1.48503 * 109.47216 * 329.99661 * 7 5 3 11 11 C 1.46491 * 120.00424 * 180.02562 * 2 1 3 12 12 H 1.08996 * 110.45996 * 179.29676 * 11 2 1 13 13 C 1.54482 * 110.51087 * 56.69149 * 11 2 1 14 14 O 1.44649 * 104.69670 * 217.47677 * 13 11 2 15 15 C 1.44421 * 105.36826 * 40.34844 * 14 13 11 16 16 C 1.54482 * 104.80427 * 319.56415 * 15 14 13 17 17 H 1.09000 * 110.51252 * 265.33421 * 16 15 14 18 18 O 1.42904 * 110.62929 * 142.68190 * 16 15 14 19 19 H 1.08998 * 109.47242 * 84.52690 * 1 2 3 20 20 H 1.08997 * 109.46679 * 204.52892 * 1 2 3 21 21 H 1.09000 * 109.47367 * 324.52794 * 1 2 3 22 22 H 0.97000 * 119.99519 * 180.02562 * 6 5 3 23 23 H 1.08998 * 110.37262 * 336.21055 * 13 11 2 24 24 H 1.08999 * 110.37157 * 98.54871 * 13 11 2 25 25 H 1.09002 * 110.37240 * 200.73411 * 15 14 13 26 26 H 1.08993 * 110.47180 * 78.44210 * 15 14 13 27 27 H 0.96697 * 113.99762 * 65.29509 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1358 1.2402 0.4370 5 6 1.5785 2.3172 -0.5666 6 7 0.5065 2.2050 -1.3220 7 14 2.3312 3.9985 -0.2570 8 1 3.3430 4.2883 -1.3046 9 1 1.2663 5.0326 -0.2977 10 1 2.9827 4.0111 1.0774 11 6 2.1975 -1.2686 -0.0006 12 1 3.2723 -1.0879 -0.0130 13 6 1.7801 -2.1341 -1.2102 14 8 1.7700 -3.4896 -0.7054 15 6 1.1956 -3.4014 0.6168 16 6 1.8059 -2.1204 1.2276 17 1 2.6875 -2.3629 1.8211 18 8 0.8399 -1.4336 2.0259 19 1 -0.3633 0.0980 -1.0229 20 1 -0.3632 -0.9349 0.4266 21 1 -0.3634 0.8369 0.5963 22 1 0.1076 2.9955 -1.7182 23 1 0.7856 -1.8506 -1.5545 24 1 2.5054 -2.0328 -2.0175 25 1 1.4720 -4.2734 1.2095 26 1 0.1109 -3.3131 0.5561 27 1 0.5585 -1.9234 2.8107 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307467225.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:20 Heat of formation + Delta-G solvation = -84.832616 kcal Electronic energy + Delta-G solvation = -12305.319936 eV Core-core repulsion = 10063.540395 eV Total energy + Delta-G solvation = -2241.779541 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.100 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.65800 -37.14555 -36.55772 -33.32261 -30.39830 -29.23533 -27.94128 -24.91633 -23.39718 -21.05121 -19.18786 -18.21595 -17.28525 -16.69543 -16.25910 -15.93494 -15.47219 -14.91996 -14.32958 -13.87964 -13.74067 -13.02877 -12.87240 -12.61263 -12.36887 -12.31008 -12.07007 -11.84021 -11.63395 -10.97992 -10.64288 -10.48852 -8.66737 -7.80002 -5.34652 1.45900 1.47551 1.57247 2.49228 2.90744 3.28996 3.57752 3.76742 3.84217 4.00363 4.20856 4.36020 4.50913 4.79222 4.87450 4.92533 5.00431 5.13775 5.40891 5.62641 5.70529 5.79488 6.36519 7.07271 7.17784 7.88014 8.35250 9.20177 Molecular weight = 187.10amu Principal moments of inertia in cm(-1) A = 0.064478 B = 0.012579 C = 0.012146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.150546 B = 2225.430882 C = 2304.709776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.193 3.807 2 N -0.584 5.584 3 C -0.268 4.268 4 H 0.065 0.935 5 C -0.051 4.051 6 N -0.935 5.935 7 Si 0.971 3.029 8 H -0.281 1.281 9 H -0.293 1.293 10 H -0.272 1.272 11 C 0.137 3.863 12 H 0.079 0.921 13 C 0.036 3.964 14 O -0.388 6.388 15 C 0.020 3.980 16 C 0.057 3.943 17 H 0.083 0.917 18 O -0.551 6.551 19 H -0.006 1.006 20 H 0.043 0.957 21 H -0.001 1.001 22 H 0.248 0.752 23 H 0.044 0.956 24 H 0.092 0.908 25 H 0.122 0.878 26 H 0.060 0.940 27 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.817 -9.159 5.440 10.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.306 5.306 3 C -0.399 4.399 4 H 0.082 0.918 5 C -0.246 4.246 6 N -0.581 5.581 7 Si 0.799 3.201 8 H -0.208 1.208 9 H -0.219 1.219 10 H -0.197 1.197 11 C 0.028 3.972 12 H 0.097 0.903 13 C -0.043 4.043 14 O -0.307 6.307 15 C -0.057 4.057 16 C -0.005 4.005 17 H 0.101 0.899 18 O -0.357 6.357 19 H 0.012 0.988 20 H 0.061 0.939 21 H 0.018 0.982 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.110 0.890 25 H 0.140 0.860 26 H 0.078 0.922 27 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.862 -8.774 4.797 10.171 hybrid contribution -0.042 0.874 0.343 0.940 sum 1.820 -7.899 5.141 9.599 Atomic orbital electron populations 1.20388 0.82659 0.96288 0.95855 1.43640 1.01849 1.00210 1.84917 1.19496 1.01546 0.88005 1.30829 0.91767 1.25910 0.99048 1.02322 0.97333 1.70228 1.24495 1.28595 1.34774 0.85231 0.77270 0.79516 0.78128 1.20767 1.21943 1.19682 1.22027 0.96536 0.86362 0.92281 0.90289 1.23980 1.00920 0.81224 0.98150 1.89058 1.83537 1.26896 1.31182 1.24251 0.98068 0.99269 0.84113 1.23616 0.91934 0.91607 0.93307 0.89927 1.86886 1.60896 1.47433 1.40470 0.98798 0.93874 0.98226 0.94264 0.93730 0.89008 0.85986 0.92151 0.77053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.06 6.83 127.77 0.87 10.93 15 2 N -0.58 -30.29 2.52 -697.13 -1.76 -32.05 15 3 C -0.27 -15.23 9.53 84.03 0.80 -14.43 15 4 H 0.06 3.54 7.86 -2.91 -0.02 3.52 15 5 C -0.05 -2.92 5.11 84.86 0.43 -2.48 15 6 N -0.94 -56.98 11.02 21.65 0.24 -56.74 15 7 Si 0.97 46.04 29.57 68.60 2.03 48.07 15 8 H -0.28 -12.96 7.11 99.48 0.71 -12.25 15 9 H -0.29 -13.93 7.11 99.48 0.71 -13.22 15 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 15 11 C 0.14 5.72 3.60 46.01 0.17 5.89 15 12 H 0.08 3.27 7.94 -2.39 -0.02 3.25 15 13 C 0.04 1.41 7.26 72.49 0.53 1.93 15 14 O -0.39 -13.42 11.65 -148.98 -1.74 -15.16 15 15 C 0.02 0.56 7.39 72.49 0.54 1.10 15 16 C 0.06 1.85 4.20 31.61 0.13 1.98 15 17 H 0.08 2.29 8.14 -2.39 -0.02 2.27 15 18 O -0.55 -18.77 9.90 -148.98 -1.47 -20.24 15 19 H -0.01 -0.35 7.16 -2.39 -0.02 -0.37 15 20 H 0.04 1.98 6.05 -2.39 -0.01 1.96 15 21 H 0.00 -0.06 7.69 -2.39 -0.02 -0.08 15 22 H 0.25 14.63 8.31 -92.71 -0.77 13.86 15 23 H 0.04 1.94 7.01 -2.39 -0.02 1.92 15 24 H 0.09 3.44 8.14 -2.39 -0.02 3.42 15 25 H 0.12 2.49 8.14 -2.39 -0.02 2.47 15 26 H 0.06 1.73 8.09 -2.39 -0.02 1.72 15 27 H 0.38 8.36 9.12 -74.06 -0.68 7.69 15 Total: -1.00 -68.00 223.56 1.26 -66.74 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: 0.49 Total: 4.46 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 3.47 Total: 4.92 kcal Atomic # 7 Polarization: -87.27 SS G_CDS: -1.52 Total: -88.79 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -3.21 Total: -35.40 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -68.00 1.26 -66.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307467225.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.091 kcal (2) G-P(sol) polarization free energy of solvation -67.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds