Wall clock time and date at job start Mon Mar 30 2020 02:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 112.49028 * 2 1 4 4 S 1.81418 * 113.14763 * 230.17169 * 2 1 3 5 5 C 1.81425 * 73.13953 * 216.13856 * 4 2 1 6 6 C 1.53043 * 113.14688 * 129.76973 * 2 1 3 7 7 H 1.09001 * 113.14821 * 32.86570 * 6 2 1 8 8 N 1.46494 * 113.15816 * 263.40852 * 6 2 1 9 9 C 1.36931 * 120.00458 * 155.00140 * 8 6 2 10 10 H 1.08002 * 120.00098 * 359.97438 * 9 8 6 11 11 C 1.38812 * 120.00429 * 179.97438 * 9 8 6 12 12 N 1.31624 * 119.99535 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00484 * 179.97438 * 11 9 8 14 14 H 1.48490 * 109.47339 * 180.02562 * 13 11 9 15 15 H 1.48493 * 109.47239 * 300.00542 * 13 11 9 16 16 H 1.48504 * 109.46636 * 60.00101 * 13 11 9 17 17 H 1.09000 * 109.47130 * 290.22766 * 1 2 3 18 18 H 1.08999 * 109.47291 * 50.22502 * 1 2 3 19 19 H 1.08997 * 109.47158 * 170.22747 * 1 2 3 20 20 H 1.09004 * 109.46767 * 189.77436 * 3 2 1 21 21 H 1.08994 * 109.47370 * 309.77209 * 3 2 1 22 22 H 1.09001 * 109.47499 * 69.77834 * 3 2 1 23 23 H 1.09002 * 113.14930 * 273.34566 * 5 4 2 24 24 H 1.09000 * 113.14831 * 143.86010 * 5 4 2 25 25 H 0.97000 * 119.99459 * 334.99939 * 8 6 2 26 26 H 0.97005 * 119.99717 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1153 1.4136 0.0000 4 16 2.2432 -1.0684 -1.2811 5 6 3.3256 -1.1918 0.1696 6 6 2.1316 -0.9002 1.0816 7 1 1.5260 -1.7820 1.2909 8 7 2.5003 -0.1718 2.2980 9 6 2.5586 -0.8284 3.4982 10 1 2.3325 -1.8833 3.5482 11 6 2.9085 -0.1383 4.6507 12 7 3.1836 1.1474 4.5899 13 14 2.9874 -1.0339 6.2881 14 1 3.3810 -0.0798 7.3557 15 1 1.6543 -1.6068 6.6037 16 1 3.9893 -2.1270 6.2065 17 1 -0.3633 0.3553 0.9643 18 1 -0.3634 0.6575 -0.7898 19 1 -0.3633 -1.0127 -0.1744 20 1 3.1900 1.3619 -0.1745 21 1 1.6469 2.0008 -0.7898 22 1 1.9261 1.8853 0.9643 23 1 4.0893 -0.4147 0.2019 24 1 3.7396 -2.1901 0.3117 25 1 2.7030 0.7757 2.2532 26 1 3.4277 1.6298 5.3953 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307486036.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:30 Heat of formation + Delta-G solvation = 6.980825 kcal Electronic energy + Delta-G solvation = -9940.741625 eV Core-core repulsion = 8145.696284 eV Total energy + Delta-G solvation = -1795.045340 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.30566 -35.23443 -32.42397 -30.63967 -28.46654 -25.97468 -23.51957 -20.83266 -19.41420 -17.04887 -16.52745 -16.10113 -15.84511 -15.01468 -14.74020 -14.40675 -13.35160 -13.21398 -13.13035 -12.92800 -12.76017 -12.48139 -12.19726 -12.12890 -11.89536 -11.49773 -10.93973 -10.79338 -9.11437 -8.75103 -7.96920 -5.27245 0.89604 1.10887 1.51553 1.53262 1.59260 2.56206 3.31679 3.67743 3.78145 4.03172 4.15196 4.18143 4.40826 4.67049 4.73772 4.84974 4.90705 4.97039 5.05573 5.20951 5.35386 5.52028 6.23220 7.32170 7.99495 8.27075 9.25042 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.065524 B = 0.011131 C = 0.010699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.221190 B = 2514.905948 C = 2616.559359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.025 4.025 3 C -0.122 4.122 4 S -0.335 6.335 5 C -0.095 4.095 6 C 0.182 3.818 7 H 0.095 0.905 8 N -0.710 5.710 9 C -0.254 4.254 10 H 0.080 0.920 11 C -0.065 4.065 12 N -0.964 5.964 13 Si 0.973 3.027 14 H -0.297 1.297 15 H -0.277 1.277 16 H -0.278 1.278 17 H 0.065 0.935 18 H 0.070 0.930 19 H 0.068 0.932 20 H 0.057 0.943 21 H 0.078 0.922 22 H 0.063 0.937 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.382 0.618 26 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.184 -2.147 -7.550 8.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.136 4.136 3 C -0.181 4.181 4 S -0.109 6.109 5 C -0.247 4.247 6 C 0.068 3.932 7 H 0.113 0.887 8 N -0.348 5.348 9 C -0.385 4.385 10 H 0.098 0.902 11 C -0.258 4.258 12 N -0.613 5.613 13 Si 0.802 3.198 14 H -0.223 1.223 15 H -0.203 1.203 16 H -0.205 1.205 17 H 0.084 0.916 18 H 0.089 0.911 19 H 0.087 0.913 20 H 0.076 0.924 21 H 0.096 0.904 22 H 0.082 0.918 23 H 0.110 0.890 24 H 0.107 0.893 25 H 0.217 0.783 26 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.367 -2.748 -8.758 9.777 hybrid contribution 0.593 0.413 1.880 2.015 sum -2.773 -2.335 -6.877 7.774 Atomic orbital electron populations 1.21746 0.90965 1.02993 1.02634 1.24266 1.00172 0.98050 0.91082 1.21718 1.00799 0.93089 1.02484 1.88439 1.36294 1.60898 1.25259 1.25538 1.02668 1.05233 0.91255 1.21804 0.91887 0.94306 0.85171 0.88715 1.42650 1.79982 1.09538 1.02673 1.19649 1.38587 0.94095 0.86199 0.90190 1.25549 1.02405 0.96550 1.01314 1.69795 1.54139 1.08611 1.28783 0.85231 0.78092 0.77228 0.79299 1.22290 1.20288 1.20452 0.91594 0.91069 0.91329 0.92379 0.90357 0.91836 0.89027 0.89315 0.78262 0.93779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.61 9.13 71.98 0.66 -2.95 15 2 C -0.02 -0.81 1.31 -10.78 -0.01 -0.83 15 3 C -0.12 -3.88 8.21 71.98 0.59 -3.29 15 4 S -0.33 -11.03 23.92 -56.49 -1.35 -12.39 15 5 C -0.10 -3.36 7.39 72.00 0.53 -2.82 15 6 C 0.18 6.96 3.51 45.02 0.16 7.12 15 7 H 0.09 3.63 8.08 -2.39 -0.02 3.61 15 8 N -0.71 -33.51 5.28 -355.19 -1.88 -35.38 15 9 C -0.25 -13.30 9.97 84.03 0.84 -12.46 15 10 H 0.08 4.01 7.83 -2.91 -0.02 3.98 15 11 C -0.07 -3.55 5.50 84.86 0.47 -3.08 15 12 N -0.96 -56.21 13.06 21.65 0.28 -55.92 15 13 Si 0.97 44.16 29.55 68.60 2.03 46.18 15 14 H -0.30 -13.66 7.11 99.48 0.71 -12.96 15 15 H -0.28 -12.12 7.11 99.48 0.71 -11.41 15 16 H -0.28 -12.25 7.11 99.48 0.71 -11.54 15 17 H 0.07 2.01 8.14 -2.39 -0.02 1.99 15 18 H 0.07 1.78 8.14 -2.39 -0.02 1.76 15 19 H 0.07 1.89 8.10 -2.39 -0.02 1.87 15 20 H 0.06 1.88 6.83 -2.39 -0.02 1.87 15 21 H 0.08 2.11 8.14 -2.39 -0.02 2.09 15 22 H 0.06 2.24 6.82 -2.39 -0.02 2.22 15 23 H 0.09 3.32 7.12 -2.39 -0.02 3.30 15 24 H 0.09 2.99 8.14 -2.39 -0.02 2.97 15 25 H 0.38 19.08 5.76 -92.71 -0.53 18.55 15 26 H 0.25 14.42 8.31 -92.70 -0.77 13.64 15 Total: -1.00 -56.80 229.57 2.94 -53.86 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.63 Total: 21.96 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 3.23 Total: -18.31 kcal Atomic # 7 Polarization: -89.71 SS G_CDS: -1.59 Total: -91.31 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: -11.03 SS G_CDS: -1.35 Total: -12.39 kcal Total: -56.80 2.94 -53.86 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307486036.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.840 kcal (2) G-P(sol) polarization free energy of solvation -56.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds