Wall clock time and date at job start Mon Mar 30 2020 02:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47191 * 2 1 4 4 C 1.50698 * 109.46921 * 239.99695 * 2 1 3 5 5 H 1.08001 * 119.99953 * 245.41586 * 4 2 1 6 6 C 1.37878 * 119.99932 * 65.14547 * 4 2 1 7 7 N 1.31514 * 120.00088 * 355.40255 * 6 4 2 8 8 Si 1.86800 * 119.99657 * 175.40602 * 6 4 2 9 9 H 1.48498 * 109.47231 * 95.00193 * 8 6 4 10 10 H 1.48504 * 109.46686 * 214.99414 * 8 6 4 11 11 H 1.48498 * 109.47292 * 334.99687 * 8 6 4 12 12 N 1.46900 * 109.47029 * 119.99639 * 2 1 3 13 13 C 1.46898 * 111.00082 * 274.99958 * 12 2 1 14 14 C 1.52997 * 109.47241 * 179.97438 * 13 12 2 15 15 F 1.39904 * 115.54806 * 34.33047 * 14 13 12 16 16 C 1.53007 * 117.49934 * 248.62282 * 14 13 12 17 17 C 1.53000 * 59.99946 * 252.50769 * 16 14 13 18 18 H 1.09000 * 109.47091 * 294.95656 * 1 2 3 19 19 H 1.08998 * 109.47272 * 54.95131 * 1 2 3 20 20 H 1.09001 * 109.47353 * 174.95593 * 1 2 3 21 21 H 0.96998 * 119.99680 * 179.97438 * 7 6 4 22 22 H 1.00906 * 110.99812 * 38.95408 * 12 2 1 23 23 H 1.09003 * 109.47236 * 300.00115 * 13 12 2 24 24 H 1.08998 * 109.47227 * 59.99994 * 13 12 2 25 25 H 1.08994 * 117.49900 * 0.02562 * 16 14 13 26 26 H 1.08998 * 117.49423 * 145.02025 * 16 14 13 27 27 H 1.08998 * 117.50420 * 252.51315 * 17 16 14 28 28 H 1.09000 * 117.51966 * 107.47967 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5792 -1.6368 -1.1337 6 6 1.7889 -0.1808 -2.4799 7 7 1.0421 0.8945 -2.6043 8 14 2.5199 -0.9908 -3.9962 9 1 1.5262 -1.9227 -4.5873 10 1 2.8740 0.0521 -4.9923 11 1 3.7404 -1.7457 -3.6144 12 7 2.0197 -0.6924 1.1995 13 6 2.0825 0.2227 2.3469 14 6 2.5950 -0.5330 3.5745 15 9 3.5420 -1.5301 3.3173 16 6 1.6083 -0.7734 4.7189 17 6 2.7324 0.2518 4.8807 18 1 -0.3633 0.4336 0.9317 19 1 -0.3634 0.5901 -0.8413 20 1 -0.3634 -1.0237 -0.0904 21 1 0.8712 1.2673 -3.4833 22 1 1.4495 -1.4979 1.4101 23 1 2.7589 1.0463 2.1182 24 1 1.0871 0.6165 2.5525 25 1 0.5940 -0.3936 4.5970 26 1 1.6969 -1.7087 5.2716 27 1 3.5605 -0.0090 5.5398 28 1 2.4581 1.3066 4.8653 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307637249.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:21 Heat of formation + Delta-G solvation = -27.707246 kcal Electronic energy + Delta-G solvation = -11529.499492 eV Core-core repulsion = 9302.569882 eV Total energy + Delta-G solvation = -2226.929610 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.107 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -47.10007 -37.03287 -35.27336 -32.29614 -28.90543 -25.23574 -24.60765 -22.56259 -20.25990 -20.15975 -16.69805 -15.87987 -15.33329 -14.67426 -14.36018 -13.88686 -13.42099 -13.08997 -12.81612 -12.02981 -11.79674 -11.62867 -11.47089 -10.95829 -10.80444 -10.64859 -10.23727 -10.19078 -9.72577 -9.49649 -8.96296 -8.36420 -7.25652 -5.97530 -3.99087 3.34915 3.41495 3.48049 3.66111 4.26537 4.46779 4.70397 4.80806 5.15045 5.34879 5.53126 5.57104 5.80999 5.95734 6.02243 6.13959 6.42633 6.65526 6.81309 7.06107 7.33713 7.69036 7.88961 8.24178 8.52915 8.60914 9.07995 9.65736 11.10696 Molecular weight = 187.11amu Principal moments of inertia in cm(-1) A = 0.068315 B = 0.009102 C = 0.008445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.768869 B = 3075.392489 C = 3314.885033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.210 3.790 3 H 0.036 0.964 4 C -0.494 4.494 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.678 5.678 13 C 0.080 3.920 14 C 0.056 3.944 15 F -0.169 7.169 16 C -0.194 4.194 17 C -0.191 4.191 18 H 0.004 0.996 19 H 0.082 0.918 20 H 0.031 0.969 21 H 0.259 0.741 22 H 0.328 0.672 23 H 0.079 0.921 24 H 0.038 0.962 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.022 -0.603 11.172 11.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.103 3.897 3 H 0.054 0.946 4 C -0.533 4.533 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.210 1.210 10 H -0.213 1.213 11 H -0.197 1.197 12 N -0.308 5.308 13 C -0.051 4.051 14 C 0.037 3.963 15 F -0.149 7.149 16 C -0.232 4.232 17 C -0.229 4.229 18 H 0.023 0.977 19 H 0.101 0.899 20 H 0.050 0.950 21 H 0.069 0.931 22 H 0.144 0.856 23 H 0.097 0.903 24 H 0.056 0.944 25 H 0.124 0.876 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.661 -0.421 10.837 10.865 hybrid contribution -0.576 -0.348 -0.584 0.891 sum 0.085 -0.769 10.253 10.282 Atomic orbital electron populations 1.22433 1.00727 1.00067 0.99273 1.19221 0.89511 0.94558 0.86404 0.94583 1.21140 1.33949 1.08571 0.89653 0.91878 1.24948 0.95279 0.95280 0.99026 1.69915 1.38082 1.22370 1.23481 0.86484 0.79568 0.78907 0.82458 1.20950 1.21326 1.19747 1.60727 1.58378 1.08765 1.02889 1.21817 0.98779 0.95513 0.88975 1.21286 0.92414 0.91376 0.91229 1.92836 1.65118 1.61714 1.95236 1.23698 0.96209 1.01320 1.01963 1.23606 1.01306 0.98487 0.99461 0.97671 0.89880 0.94979 0.93108 0.85557 0.90307 0.94400 0.87607 0.88101 0.88005 0.87497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 8.94 37.16 0.33 -3.63 15 2 C 0.21 5.37 2.52 -68.86 -0.17 5.19 15 3 H 0.04 1.00 7.80 -51.93 -0.40 0.59 15 4 C -0.49 -13.99 8.78 -34.44 -0.30 -14.29 15 5 H 0.06 1.82 7.82 -52.49 -0.41 1.41 15 6 C 0.06 1.55 5.36 -17.82 -0.10 1.46 15 7 N -0.90 -25.97 11.58 55.43 0.64 -25.33 15 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 15 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 15 12 N -0.68 -15.00 5.95 -107.95 -0.64 -15.64 15 13 C 0.08 1.45 5.74 -3.83 -0.02 1.43 15 14 C 0.06 0.89 3.54 -90.62 -0.32 0.57 15 15 F -0.17 -3.18 17.20 2.25 0.04 -3.15 15 16 C -0.19 -2.42 10.16 -26.73 -0.27 -2.69 15 17 C -0.19 -2.31 10.24 -26.73 -0.27 -2.59 15 18 H 0.00 0.09 7.35 -51.93 -0.38 -0.29 15 19 H 0.08 2.19 6.45 -51.93 -0.33 1.86 15 20 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 21 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 22 H 0.33 6.95 8.48 -39.29 -0.33 6.62 15 23 H 0.08 1.46 8.06 -51.93 -0.42 1.05 15 24 H 0.04 0.65 7.12 -51.93 -0.37 0.28 15 25 H 0.11 1.20 8.05 -51.93 -0.42 0.78 15 26 H 0.10 1.16 8.14 -51.93 -0.42 0.74 15 27 H 0.10 1.13 8.14 -51.93 -0.42 0.70 15 28 H 0.11 1.14 8.14 -51.93 -0.42 0.71 15 LS Contribution 242.86 15.07 3.66 3.66 Total: -1.00 -29.42 242.86 -6.35 -35.76 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -3.90 Total: 2.43 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -1.13 Total: -14.55 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.00 Total: -40.97 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.04 Total: -3.15 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.42 -6.35 -35.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307637249.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.054 kcal (2) G-P(sol) polarization free energy of solvation -29.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds