Wall clock time and date at job start Mon Mar 30 2020 02:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46898 * 111.00021 * 2 1 4 4 C 1.50699 * 109.47118 * 66.04516 * 3 2 1 5 5 H 1.07995 * 120.00512 * 359.72319 * 4 3 2 6 6 C 1.37884 * 119.99500 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00113 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99506 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47101 * 89.99762 * 8 6 4 10 10 H 1.48503 * 109.46712 * 209.99401 * 8 6 4 11 11 H 1.48500 * 109.47140 * 329.99342 * 8 6 4 12 12 C 1.46900 * 111.00333 * 236.03984 * 2 1 3 13 13 C 1.52998 * 109.47442 * 199.59428 * 12 2 1 14 14 F 1.39897 * 115.54891 * 32.98076 * 13 12 2 15 15 C 1.53001 * 117.49624 * 247.31891 * 13 12 2 16 16 C 1.53001 * 117.49806 * 178.65632 * 13 12 2 17 17 H 1.09008 * 109.47065 * 54.93562 * 1 2 3 18 18 H 1.08997 * 109.47459 * 174.93400 * 1 2 3 19 19 H 1.09001 * 109.47305 * 294.93394 * 1 2 3 20 20 H 1.08998 * 109.47061 * 306.04230 * 3 2 1 21 21 H 1.09005 * 109.47163 * 186.04279 * 3 2 1 22 22 H 0.97006 * 119.99453 * 180.02562 * 7 6 4 23 23 H 1.09000 * 109.47189 * 319.59637 * 12 2 1 24 24 H 1.08996 * 109.46531 * 79.58808 * 12 2 1 25 25 H 1.09002 * 117.49773 * 359.97438 * 15 13 12 26 26 H 1.08999 * 117.49941 * 145.01998 * 15 13 12 27 27 H 1.09000 * 117.49727 * 214.97475 * 16 13 12 28 28 H 1.09001 * 117.49837 * 359.97438 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0704 1.5129 2.0468 6 6 2.0268 3.3495 1.5284 7 7 2.7119 4.0019 0.6148 8 14 1.5817 4.1873 3.1376 9 1 2.6582 3.9513 4.1328 10 1 1.4293 5.6469 2.9100 11 1 0.3038 3.6300 3.6489 12 6 1.9955 -0.7661 -1.1375 13 6 3.4469 -1.1612 -0.8582 14 9 3.7569 -1.4111 0.4829 15 6 4.5325 -0.5228 -1.7270 16 6 4.1678 -1.9973 -1.9176 17 1 -0.3633 0.5904 -0.8412 18 1 -0.3634 -1.0236 -0.0907 19 1 -0.3634 0.4332 0.9319 20 1 1.5611 1.9273 -0.8309 21 1 3.0797 1.3444 -0.1082 22 1 2.9865 4.9180 0.7768 23 1 1.3951 -1.6647 -1.2794 24 1 1.9523 -0.1544 -2.0385 25 1 4.2125 0.1784 -2.4978 26 1 5.4883 -0.2979 -1.2538 27 1 4.8839 -2.7418 -1.5697 28 1 3.6078 -2.2661 -2.8133 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307731727.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:40 Heat of formation + Delta-G solvation = -19.705004 kcal Electronic energy + Delta-G solvation = -11748.967349 eV Core-core repulsion = 9522.384743 eV Total energy + Delta-G solvation = -2226.582606 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.107 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -46.83107 -37.18868 -35.24308 -32.42772 -27.76745 -26.91903 -23.82630 -22.29951 -20.95422 -19.72049 -16.37697 -15.87357 -15.37975 -14.65888 -14.30216 -13.77766 -13.40676 -13.29906 -12.75029 -11.97612 -11.81857 -11.69629 -11.28809 -11.25450 -10.92940 -10.62554 -10.47308 -9.98628 -9.84251 -9.27016 -9.10908 -8.38900 -7.25499 -5.98790 -3.99180 3.35724 3.41086 3.44945 3.84971 4.44721 4.50907 4.79318 4.99572 5.17713 5.37188 5.53764 5.71849 5.89298 5.92377 6.07471 6.11113 6.24477 6.34371 6.59667 6.73077 7.31511 7.32807 7.82977 8.10838 8.21211 8.56983 9.07799 9.64431 11.12416 Molecular weight = 187.11amu Principal moments of inertia in cm(-1) A = 0.049772 B = 0.011165 C = 0.010346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.426804 B = 2507.261303 C = 2705.738160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.538 5.538 3 C 0.193 3.807 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.074 3.926 13 C 0.067 3.933 14 F -0.166 7.166 15 C -0.187 4.187 16 C -0.196 4.196 17 H 0.014 0.986 18 H 0.044 0.956 19 H 0.074 0.926 20 H -0.010 1.010 21 H 0.033 0.967 22 H 0.260 0.740 23 H 0.072 0.928 24 H 0.044 0.956 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.129 -8.622 -5.114 10.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.262 5.262 3 C 0.068 3.932 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.056 4.056 13 C 0.048 3.952 14 F -0.146 7.146 15 C -0.224 4.224 16 C -0.234 4.234 17 H 0.032 0.968 18 H 0.063 0.937 19 H 0.092 0.908 20 H 0.008 0.992 21 H 0.052 0.948 22 H 0.070 0.930 23 H 0.090 0.910 24 H 0.062 0.938 25 H 0.124 0.876 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.361 -8.669 -4.668 9.853 hybrid contribution -0.272 0.973 0.189 1.028 sum 0.089 -7.696 -4.479 8.905 Atomic orbital electron populations 1.22194 0.88336 0.98830 1.01371 1.62015 1.07006 1.18277 1.38886 1.19793 0.95715 0.81096 0.96572 1.21166 1.34527 0.96870 1.01790 0.91874 1.24984 0.95369 0.97325 0.96981 1.69962 1.38596 1.11427 1.34019 0.86490 0.78877 0.78318 0.83678 1.20613 1.21364 1.19866 1.21918 0.91438 0.98263 0.93968 1.21013 0.94045 1.03748 0.76399 1.92837 1.93758 1.94394 1.33585 1.23663 1.00550 0.95295 1.02940 1.23665 1.03815 0.95086 1.00836 0.96770 0.93690 0.90752 0.99230 0.94846 0.93003 0.90952 0.93750 0.87610 0.87975 0.88169 0.87848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 9.31 60.06 0.56 1.38 15 2 N -0.54 -12.19 4.38 -244.38 -1.07 -13.26 15 3 C 0.19 5.19 4.55 -4.98 -0.02 5.17 15 4 C -0.50 -14.67 8.59 -34.44 -0.30 -14.97 15 5 H 0.06 1.82 7.09 -52.49 -0.37 1.45 15 6 C 0.05 1.58 5.46 -17.82 -0.10 1.48 15 7 N -0.90 -27.21 13.29 55.43 0.74 -26.48 15 8 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 15 9 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 10 H -0.29 -6.98 7.11 56.52 0.40 -6.57 15 11 H -0.27 -6.60 7.11 56.52 0.40 -6.19 15 12 C 0.07 1.36 5.26 -3.83 -0.02 1.34 15 13 C 0.07 1.22 2.80 -90.62 -0.25 0.97 15 14 F -0.17 -3.59 17.18 2.25 0.04 -3.55 15 15 C -0.19 -2.98 10.06 -26.69 -0.27 -3.25 15 16 C -0.20 -2.66 10.24 -26.69 -0.27 -2.93 15 17 H 0.01 0.27 8.08 -51.92 -0.42 -0.15 15 18 H 0.04 0.75 7.85 -51.93 -0.41 0.34 15 19 H 0.07 1.56 7.00 -51.93 -0.36 1.20 15 20 H -0.01 -0.28 8.07 -51.93 -0.42 -0.70 15 21 H 0.03 0.96 7.34 -51.93 -0.38 0.58 15 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 23 H 0.07 1.15 7.75 -51.93 -0.40 0.75 15 24 H 0.04 0.79 7.75 -51.93 -0.40 0.39 15 25 H 0.11 1.61 8.04 -51.93 -0.42 1.19 15 26 H 0.10 1.61 8.14 -51.93 -0.42 1.19 15 27 H 0.10 1.24 8.14 -51.93 -0.42 0.82 15 28 H 0.10 1.16 8.14 -51.93 -0.42 0.74 15 LS Contribution 243.68 15.07 3.67 3.67 Total: -1.00 -31.35 243.68 -6.30 -37.66 By element: Atomic # 1 Polarization: -0.36 SS G_CDS: -3.99 Total: -4.35 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -0.67 Total: -10.81 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: -0.33 Total: -39.74 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.04 Total: -3.55 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -31.35 -6.30 -37.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307731727.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.953 kcal (2) G-P(sol) polarization free energy of solvation -31.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds