Wall clock time and date at job start Mon Mar 30 2020 02:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47068 * 2 1 4 4 C 1.50693 * 109.47382 * 120.00217 * 2 1 3 5 5 H 1.08006 * 120.00263 * 116.31739 * 4 2 1 6 6 C 1.37885 * 119.99994 * 296.31775 * 4 2 1 7 7 N 1.31511 * 119.99986 * 353.13015 * 6 4 2 8 8 Si 1.86802 * 119.99909 * 173.12780 * 6 4 2 9 9 H 1.48499 * 109.46933 * 265.04696 * 8 6 4 10 10 H 1.48494 * 109.47071 * 25.04746 * 8 6 4 11 11 H 1.48501 * 109.46805 * 145.05021 * 8 6 4 12 12 N 1.46902 * 109.47334 * 240.00214 * 2 1 3 13 13 C 1.47448 * 110.99919 * 59.99696 * 12 2 1 14 14 C 1.54315 * 107.23162 * 123.25865 * 13 12 2 15 15 C 1.55139 * 103.02076 * 22.28588 * 14 13 12 16 16 H 1.09004 * 110.98793 * 82.43343 * 15 14 13 17 17 F 1.39901 * 110.99312 * 206.25500 * 15 14 13 18 18 C 1.47837 * 111.00483 * 180.84163 * 12 2 1 19 19 H 1.08996 * 109.47313 * 294.01842 * 1 2 3 20 20 H 1.09003 * 109.47149 * 54.01896 * 1 2 3 21 21 H 1.09002 * 109.47123 * 174.01717 * 1 2 3 22 22 H 0.96998 * 119.99978 * 179.97438 * 7 6 4 23 23 H 1.09002 * 109.89176 * 242.66692 * 13 12 2 24 24 H 1.09005 * 109.88796 * 3.69050 * 13 12 2 25 25 H 1.09005 * 110.70312 * 140.66878 * 14 13 12 26 26 H 1.09001 * 110.71107 * 263.72569 * 14 13 12 27 27 H 1.09003 * 110.37352 * 332.46429 * 18 12 2 28 28 H 1.08999 * 110.37683 * 94.80106 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6033 -1.6219 1.1324 6 6 1.7631 -0.1967 2.4813 7 7 1.1870 0.9796 2.5990 8 14 2.2165 -1.1718 4.0088 9 1 1.0390 -1.9536 4.4645 10 1 3.3329 -2.0980 3.6915 11 1 2.6377 -0.2388 5.0846 12 7 2.0197 -0.6924 -1.1995 13 6 1.5469 -0.0238 -2.4256 14 6 2.7947 0.3463 -3.2547 15 6 3.8711 -0.6368 -2.7240 16 1 3.7847 -1.6092 -3.2088 17 9 5.1564 -0.1093 -2.8886 18 6 3.4974 -0.7298 -1.2236 19 1 -0.3634 0.4183 0.9386 20 1 -0.3633 0.6038 -0.8316 21 1 -0.3633 -1.0221 -0.1071 22 1 0.9972 1.3408 3.4790 23 1 0.9105 -0.7010 -2.9954 24 1 0.9907 0.8769 -2.1659 25 1 2.6138 0.1829 -4.3171 26 1 3.0879 1.3797 -3.0696 27 1 3.9074 0.1196 -0.6771 28 1 3.8604 -1.6659 -0.7994 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606245646.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:14 Heat of formation + Delta-G solvation = -70.933170 kcal Electronic energy + Delta-G solvation = -11913.406158 eV Core-core repulsion = 9684.602131 eV Total energy + Delta-G solvation = -2228.804026 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.107 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.60384 -39.66126 -35.53670 -32.87887 -30.17359 -28.86149 -27.04993 -23.50248 -22.16697 -21.02614 -18.61680 -17.55036 -17.29999 -16.35520 -15.68058 -15.53454 -15.15564 -14.45667 -14.27500 -14.05277 -13.68278 -12.98591 -12.65146 -12.63526 -12.55527 -12.28997 -12.13646 -11.76752 -11.51005 -11.44746 -10.96563 -10.56189 -9.04465 -8.16743 -6.26181 1.40841 1.41979 1.52504 2.40825 3.12444 3.17650 3.43424 3.61299 3.88341 4.00419 4.36072 4.57474 4.74771 4.78243 4.82225 4.87600 4.99487 5.04955 5.11902 5.27343 5.42482 5.68350 5.68859 6.15291 6.26429 6.61664 6.87794 7.42778 8.91661 Molecular weight = 187.11amu Principal moments of inertia in cm(-1) A = 0.050626 B = 0.012026 C = 0.010453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.940007 B = 2327.810391 C = 2677.955758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.210 3.790 3 H -0.034 1.034 4 C -0.522 4.522 5 H 0.056 0.944 6 C 0.011 3.989 7 N -0.922 5.922 8 Si 0.959 3.041 9 H -0.273 1.273 10 H -0.269 1.269 11 H -0.284 1.284 12 N -0.530 5.530 13 C 0.036 3.964 14 C -0.155 4.155 15 C 0.081 3.919 16 H 0.126 0.874 17 F -0.220 7.220 18 C 0.035 3.965 19 H 0.046 0.954 20 H 0.035 0.965 21 H 0.041 0.959 22 H 0.262 0.738 23 H 0.094 0.906 24 H 0.047 0.953 25 H 0.115 0.885 26 H 0.066 0.934 27 H 0.026 0.974 28 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.957 -2.733 -9.348 9.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.103 3.897 3 H -0.016 1.016 4 C -0.560 4.560 5 H 0.074 0.926 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.784 3.216 9 H -0.199 1.199 10 H -0.193 1.193 11 H -0.210 1.210 12 N -0.255 5.255 13 C -0.091 4.091 14 C -0.193 4.193 15 C 0.045 3.955 16 H 0.144 0.856 17 F -0.201 7.201 18 C -0.094 4.094 19 H 0.065 0.935 20 H 0.054 0.946 21 H 0.060 0.940 22 H 0.071 0.929 23 H 0.112 0.888 24 H 0.065 0.935 25 H 0.134 0.866 26 H 0.084 0.916 27 H 0.044 0.956 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.717 -3.093 -9.190 9.848 hybrid contribution 0.503 0.782 1.206 1.523 sum 2.220 -2.310 -7.985 8.604 Atomic orbital electron populations 1.21594 0.96911 0.99307 0.99686 1.19262 0.92833 0.90241 0.87336 1.01633 1.21390 1.34174 1.09343 0.91127 0.92555 1.25734 0.95384 0.95622 1.02032 1.70068 1.44069 1.17660 1.24330 0.85525 0.78648 0.78516 0.78862 1.19899 1.19301 1.21019 1.63651 1.07067 1.51989 1.02769 1.22905 0.97091 0.98128 0.91021 1.23305 0.94583 0.99069 1.02350 1.22905 0.77374 0.98963 0.96305 0.85592 1.92752 1.41992 1.88836 1.96493 1.23286 0.89702 1.01252 0.95127 0.93464 0.94644 0.94009 0.92864 0.88819 0.93467 0.86641 0.91564 0.95587 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.83 71.98 0.64 -4.99 15 2 C 0.21 10.80 1.53 44.17 0.07 10.87 15 3 H -0.03 -1.97 8.10 -2.39 -0.02 -1.99 15 4 C -0.52 -29.12 7.97 25.60 0.20 -28.91 15 5 H 0.06 3.13 7.35 -2.91 -0.02 3.11 15 6 C 0.01 0.62 5.19 84.66 0.44 1.06 15 7 N -0.92 -53.89 11.91 21.45 0.26 -53.63 15 8 Si 0.96 44.10 29.54 68.60 2.03 46.13 15 9 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 15 11 H -0.28 -12.85 7.11 99.48 0.71 -12.15 15 12 N -0.53 -22.43 5.02 -864.77 -4.34 -26.77 15 13 C 0.04 1.21 6.22 86.64 0.54 1.75 15 14 C -0.15 -4.29 6.75 31.77 0.21 -4.08 15 15 C 0.08 2.45 4.85 31.98 0.16 2.61 15 16 H 0.13 3.09 8.14 -2.39 -0.02 3.07 15 17 F -0.22 -7.20 17.24 44.97 0.78 -6.43 15 18 C 0.04 1.40 5.51 86.77 0.48 1.88 15 19 H 0.05 2.51 6.52 -2.39 -0.02 2.50 15 20 H 0.03 1.49 6.69 -2.39 -0.02 1.47 15 21 H 0.04 1.92 8.14 -2.39 -0.02 1.90 15 22 H 0.26 14.54 8.31 -92.71 -0.77 13.77 15 23 H 0.09 2.68 8.14 -2.39 -0.02 2.66 15 24 H 0.05 1.68 6.34 -2.38 -0.02 1.67 15 25 H 0.12 2.34 8.14 -2.38 -0.02 2.32 15 26 H 0.07 1.96 8.14 -2.39 -0.02 1.94 15 27 H 0.03 1.18 7.77 -2.39 -0.02 1.16 15 28 H 0.08 3.09 7.94 -2.39 -0.02 3.07 15 Total: -1.00 -61.40 231.61 2.58 -58.82 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: 1.13 Total: 1.69 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 2.73 Total: -19.81 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -4.09 Total: -80.41 kcal Atomic # 9 Polarization: -7.20 SS G_CDS: 0.78 Total: -6.43 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -61.40 2.58 -58.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245646.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.114 kcal (2) G-P(sol) polarization free energy of solvation -61.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds