Wall clock time and date at job start Mon Mar 30 2020 02:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46769 * 2 1 4 4 C 1.50704 * 109.46763 * 240.00719 * 2 1 3 5 5 H 1.07996 * 119.99704 * 239.99234 * 4 2 1 6 6 C 1.37871 * 120.00109 * 59.99676 * 4 2 1 7 7 N 1.31513 * 120.00322 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99924 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46747 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46918 * 119.99923 * 8 6 4 11 11 H 1.48499 * 109.47198 * 240.00230 * 8 6 4 12 12 N 1.46893 * 109.47404 * 120.00475 * 2 1 3 13 13 C 1.47844 * 111.00109 * 300.91840 * 12 2 1 14 14 C 1.54905 * 104.79619 * 213.63734 * 13 12 2 15 15 C 1.55135 * 101.65397 * 37.06932 * 14 13 12 16 16 H 1.09002 * 110.70679 * 205.96021 * 15 14 13 17 17 F 1.39905 * 110.70796 * 82.72813 * 15 14 13 18 18 C 1.47439 * 110.99966 * 180.02562 * 12 2 1 19 19 H 1.08993 * 109.47594 * 54.44200 * 1 2 3 20 20 H 1.09007 * 109.47282 * 174.44803 * 1 2 3 21 21 H 1.09004 * 109.47093 * 294.44332 * 1 2 3 22 22 H 0.97001 * 120.00331 * 180.02562 * 7 6 4 23 23 H 1.09004 * 110.37176 * 332.46394 * 13 12 2 24 24 H 1.08995 * 110.37730 * 94.80550 * 13 12 2 25 25 H 1.08997 * 110.99430 * 278.97316 * 14 13 12 26 26 H 1.09006 * 111.02246 * 155.17769 * 14 13 12 27 27 H 1.08998 * 109.89212 * 242.66014 * 18 12 2 28 28 H 1.08998 * 109.89018 * 3.69027 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3223 -1.1192 -4.0081 9 1 3.1472 -2.2860 -3.6040 10 1 1.1676 -1.5862 -4.8166 11 1 3.1470 -0.1854 -4.8162 12 7 2.0197 -0.6925 1.1993 13 6 1.5277 -0.0352 2.4288 14 6 2.6717 -0.2140 3.4578 15 6 3.9276 -0.0536 2.5614 16 1 4.7787 -0.5809 2.9923 17 9 4.2282 1.2991 2.3685 18 6 3.4936 -0.7116 1.2336 19 1 -0.3634 0.5976 -0.8360 20 1 -0.3634 -1.0229 -0.0994 21 1 -0.3633 0.4253 0.9356 22 1 0.7087 1.1617 -3.4843 23 1 1.3442 1.0236 2.2455 24 1 0.6194 -0.5229 2.7825 25 1 2.6387 -1.2052 3.9100 26 1 2.6354 0.5627 4.2218 27 1 3.8522 -1.7402 1.1943 28 1 3.8915 -0.1479 0.3899 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606245647.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:17 Heat of formation + Delta-G solvation = -51.019753 kcal Electronic energy + Delta-G solvation = -12021.137809 eV Core-core repulsion = 9793.197294 eV Total energy + Delta-G solvation = -2227.940516 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.107 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -47.19749 -37.84017 -33.57845 -30.97105 -28.61078 -27.24935 -24.99939 -21.71744 -20.55523 -19.37026 -16.41042 -16.11137 -15.62578 -14.58403 -14.53638 -13.63583 -13.52987 -12.85490 -12.26462 -11.98505 -11.90934 -11.13636 -11.03203 -10.81406 -10.64959 -10.55986 -10.28451 -10.13087 -9.96661 -9.76457 -8.88535 -8.43636 -7.22275 -5.99984 -4.04220 3.30755 3.38339 3.42839 4.41854 4.76688 4.82058 4.99006 5.18380 5.30637 5.47331 5.77880 5.86408 6.04423 6.32298 6.44015 6.55432 6.68481 6.85451 7.05299 7.07424 7.51444 7.66168 7.85198 8.14252 8.31460 8.56157 9.02078 9.60660 11.07371 Molecular weight = 187.11amu Principal moments of inertia in cm(-1) A = 0.053176 B = 0.012358 C = 0.011257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.430442 B = 2265.152308 C = 2486.642357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.205 3.795 3 H 0.002 0.998 4 C -0.504 4.504 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.523 5.523 13 C 0.043 3.957 14 C -0.153 4.153 15 C 0.060 3.940 16 H 0.086 0.914 17 F -0.213 7.213 18 C 0.030 3.970 19 H 0.081 0.919 20 H 0.035 0.965 21 H 0.008 0.992 22 H 0.260 0.740 23 H 0.042 0.958 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.252 -1.915 8.498 9.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.099 3.901 3 H 0.019 0.981 4 C -0.542 4.542 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.248 5.248 13 C -0.085 4.085 14 C -0.191 4.191 15 C 0.022 3.978 16 H 0.104 0.896 17 F -0.194 7.194 18 C -0.099 4.099 19 H 0.100 0.900 20 H 0.054 0.946 21 H 0.027 0.973 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.978 -2.273 8.302 9.108 hybrid contribution 0.559 0.499 -0.880 1.156 sum 3.537 -1.774 7.422 8.411 Atomic orbital electron populations 1.21796 0.97565 1.00385 0.99029 1.19492 0.92523 0.92047 0.86052 0.98078 1.21152 1.31067 1.12252 0.89752 0.91967 1.24945 0.95224 0.95072 0.99066 1.69917 1.36973 1.23002 1.23317 0.86456 0.78590 0.79595 0.82866 1.19743 1.21021 1.21127 1.63757 1.05680 1.52714 1.02694 1.22989 0.97217 0.97767 0.90565 1.23296 0.95058 1.02784 0.97981 1.22962 0.98221 0.77715 0.98858 0.89590 1.92796 1.94557 1.35630 1.96412 1.23298 0.90808 1.00646 0.95106 0.89994 0.94583 0.97335 0.93037 0.93977 0.90875 0.89568 0.90682 0.90393 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 8.87 37.16 0.33 -2.92 15 2 C 0.20 5.34 1.65 -68.87 -0.11 5.22 15 3 H 0.00 0.05 8.11 -51.93 -0.42 -0.37 15 4 C -0.50 -14.04 7.69 -34.44 -0.26 -14.31 15 5 H 0.06 1.73 7.43 -52.49 -0.39 1.34 15 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 15 7 N -0.89 -25.91 11.38 55.43 0.63 -25.28 15 8 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 15 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 12 N -0.52 -11.56 5.02 -224.62 -1.13 -12.69 15 13 C 0.04 0.80 5.32 -2.30 -0.01 0.79 15 14 C -0.15 -2.29 6.88 -24.60 -0.17 -2.46 15 15 C 0.06 0.98 4.75 -24.86 -0.12 0.86 15 16 H 0.09 1.13 8.14 -51.93 -0.42 0.71 15 17 F -0.21 -4.06 17.20 2.25 0.04 -4.02 15 18 C 0.03 0.60 5.88 -2.79 -0.02 0.58 15 19 H 0.08 2.23 6.24 -51.93 -0.32 1.90 15 20 H 0.03 0.89 8.14 -51.92 -0.42 0.47 15 21 H 0.01 0.17 6.83 -51.93 -0.35 -0.18 15 22 H 0.26 7.15 8.31 -40.82 -0.34 6.82 15 23 H 0.04 0.84 7.61 -51.93 -0.40 0.45 15 24 H 0.07 1.28 8.09 -51.93 -0.42 0.86 15 25 H 0.09 1.12 8.14 -51.93 -0.42 0.70 15 26 H 0.07 1.01 8.14 -51.93 -0.42 0.58 15 27 H 0.08 1.41 8.14 -51.93 -0.42 0.99 15 28 H 0.08 1.75 7.02 -51.93 -0.36 1.39 15 LS Contribution 231.14 15.07 3.48 3.48 Total: -1.00 -29.48 231.14 -6.37 -35.86 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: -3.92 Total: -3.20 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -0.46 Total: -10.69 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: -0.50 Total: -37.97 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.04 Total: -4.02 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -29.48 -6.37 -35.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606245647.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.163 kcal (2) G-P(sol) polarization free energy of solvation -29.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds