Wall clock time and date at job start Mon Mar 30 2020 02:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00019 * 2 1 4 4 H 1.48498 * 109.47064 * 274.87953 * 3 2 1 5 5 H 1.48500 * 109.47025 * 34.88229 * 3 2 1 6 6 H 1.48500 * 109.47233 * 154.87833 * 3 2 1 7 7 C 1.38817 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99939 * 339.80961 * 7 2 1 9 9 N 1.36936 * 119.99752 * 159.80555 * 7 2 1 10 10 C 1.46932 * 120.62839 * 152.91391 * 9 7 2 11 11 C 1.53192 * 108.89111 * 126.46224 * 10 9 7 12 12 H 1.09004 * 109.49899 * 294.61100 * 11 10 9 13 13 O 1.42902 * 109.49765 * 174.54869 * 11 10 9 14 14 C 1.53036 * 109.31486 * 54.56367 * 11 10 9 15 15 C 1.53042 * 109.53957 * 298.63288 * 14 11 10 16 16 H 1.09006 * 109.50050 * 301.38316 * 15 14 11 17 17 O 1.42899 * 109.50331 * 181.31645 * 15 14 11 18 18 C 1.46964 * 120.65500 * 332.72717 * 9 7 2 19 19 H 0.96999 * 119.99839 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.58506 * 6.60144 * 10 9 7 21 21 H 1.09000 * 109.58537 * 246.31578 * 10 9 7 22 22 H 0.96695 * 113.99631 * 59.99575 * 13 11 10 23 23 H 1.08997 * 109.46625 * 58.65226 * 14 11 10 24 24 H 1.09007 * 109.46251 * 178.61698 * 14 11 10 25 25 H 0.96700 * 114.00564 * 180.02562 * 17 15 14 26 26 H 1.09002 * 109.46502 * 113.75225 * 18 9 7 27 27 H 1.09001 * 109.59506 * 353.40025 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3946 2.1059 -1.3950 5 1 1.5031 2.6206 0.8007 6 1 3.5955 1.4126 0.5944 7 6 2.0103 -1.2022 0.0005 8 1 1.5201 -2.1086 0.3238 9 7 3.3165 -1.2388 -0.4088 10 6 4.2327 -2.2674 0.1024 11 6 4.8827 -2.9865 -1.0838 12 1 4.1207 -3.5319 -1.6407 13 8 5.8696 -3.9020 -0.6041 14 6 5.5446 -1.9549 -2.0002 15 6 4.4828 -0.9944 -2.5406 16 1 3.7247 -1.5584 -3.0842 17 8 5.0968 -0.0503 -3.4202 18 6 3.8282 -0.2527 -1.3709 19 1 -0.4850 0.8400 0.0004 20 1 3.6763 -2.9855 0.7048 21 1 5.0044 -1.7986 0.7129 22 1 5.5198 -4.5837 -0.0142 23 1 6.2892 -1.3930 -1.4364 24 1 6.0290 -2.4660 -2.8323 25 1 4.4813 0.5913 -3.8004 26 1 4.5667 0.3826 -0.8819 27 1 3.0049 0.3586 -1.7407 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610604147.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:14 Heat of formation + Delta-G solvation = -105.957200 kcal Electronic energy + Delta-G solvation = -12203.572587 eV Core-core repulsion = 9960.877015 eV Total energy + Delta-G solvation = -2242.695572 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.23170 -37.69460 -36.70280 -34.10950 -32.14914 -30.34844 -27.32975 -24.17113 -23.56628 -21.20871 -18.98364 -18.52162 -17.85935 -17.39164 -16.33217 -15.86278 -15.32508 -14.95115 -14.72145 -14.56823 -13.66851 -13.42969 -13.21996 -12.93448 -12.75343 -12.42117 -11.76905 -11.67400 -11.43044 -11.28464 -10.96329 -10.65646 -9.03323 -8.22518 -5.57356 1.24944 1.39622 1.47808 2.35457 2.67246 3.05631 3.33061 3.75946 3.85986 3.97263 4.04173 4.13120 4.29115 4.46277 4.74613 4.80870 4.90287 4.97937 5.04303 5.24293 5.76189 6.06263 6.70073 6.79531 6.91452 7.51561 7.91105 8.96497 Molecular weight = 187.10amu Principal moments of inertia in cm(-1) A = 0.041966 B = 0.016602 C = 0.013320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.041815 B = 1686.164557 C = 2101.625472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.029 4.029 3 Si 0.943 3.057 4 H -0.269 1.269 5 H -0.308 1.308 6 H -0.267 1.267 7 C -0.256 4.256 8 H 0.061 0.939 9 N -0.612 5.612 10 C 0.115 3.885 11 C 0.104 3.896 12 H 0.059 0.941 13 O -0.573 6.573 14 C -0.096 4.096 15 C 0.101 3.899 16 H 0.060 0.940 17 O -0.574 6.574 18 C 0.093 3.907 19 H 0.264 0.736 20 H 0.071 0.929 21 H 0.035 0.965 22 H 0.397 0.603 23 H 0.065 0.935 24 H 0.079 0.921 25 H 0.394 0.606 26 H 0.034 0.966 27 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.625 -2.875 -3.819 10.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.225 4.225 3 Si 0.772 3.228 4 H -0.196 1.196 5 H -0.237 1.237 6 H -0.192 1.192 7 C -0.385 4.385 8 H 0.079 0.921 9 N -0.339 5.339 10 C -0.010 4.010 11 C 0.044 3.956 12 H 0.077 0.923 13 O -0.381 6.381 14 C -0.134 4.134 15 C 0.040 3.960 16 H 0.078 0.922 17 O -0.381 6.381 18 C -0.032 4.032 19 H 0.073 0.927 20 H 0.090 0.910 21 H 0.053 0.947 22 H 0.247 0.753 23 H 0.083 0.917 24 H 0.098 0.902 25 H 0.244 0.756 26 H 0.052 0.948 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.428 -2.777 -4.019 11.516 hybrid contribution -1.072 0.911 0.462 1.481 sum 9.356 -1.865 -3.556 10.181 Atomic orbital electron populations 1.69943 1.07252 1.27429 1.54978 1.25873 0.95832 1.00827 0.99962 0.85973 0.78595 0.80437 0.77827 1.19586 1.23705 1.19171 1.18888 0.85972 0.93971 1.39663 0.92124 1.44256 1.07867 1.33775 1.47978 1.21827 0.92597 0.91500 0.95122 1.21955 0.89376 0.89891 0.94426 0.92310 1.86394 1.37394 1.45066 1.69205 1.21224 0.97425 0.95616 0.99117 1.22067 0.94051 0.90073 0.89774 0.92211 1.86371 1.40508 1.47311 1.63933 1.22135 0.97183 0.92680 0.91234 0.92687 0.91040 0.94695 0.75273 0.91661 0.90240 0.75615 0.94766 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.17 13.97 21.65 0.30 -57.87 15 2 C -0.03 -1.68 5.24 84.86 0.44 -1.23 15 3 Si 0.94 45.49 24.35 68.60 1.67 47.16 15 4 H -0.27 -12.01 6.70 99.48 0.67 -11.34 15 5 H -0.31 -15.14 7.11 99.48 0.71 -14.44 15 6 H -0.27 -12.65 6.45 99.48 0.64 -12.00 15 7 C -0.26 -14.10 10.04 84.03 0.84 -13.26 15 8 H 0.06 3.60 8.05 -2.91 -0.02 3.58 15 9 N -0.61 -28.21 2.78 -698.98 -1.94 -30.16 15 10 C 0.11 4.33 6.14 86.36 0.53 4.86 15 11 C 0.10 3.33 3.62 30.67 0.11 3.44 15 12 H 0.06 1.89 8.14 -2.39 -0.02 1.87 15 13 O -0.57 -15.78 13.32 -148.98 -1.99 -17.76 15 14 C -0.10 -3.16 5.19 30.62 0.16 -3.00 15 15 C 0.10 3.53 3.62 30.67 0.11 3.64 15 16 H 0.06 2.10 8.14 -2.38 -0.02 2.08 15 17 O -0.57 -17.93 13.32 -148.98 -1.98 -19.92 15 18 C 0.09 3.91 3.82 86.36 0.33 4.23 15 19 H 0.26 15.33 8.31 -92.71 -0.77 14.56 15 20 H 0.07 2.59 7.93 -2.39 -0.02 2.57 15 21 H 0.04 1.32 8.14 -2.39 -0.02 1.30 15 22 H 0.40 7.33 9.08 -74.06 -0.67 6.66 15 23 H 0.06 2.21 8.14 -2.39 -0.02 2.19 15 24 H 0.08 2.41 8.14 -2.38 -0.02 2.39 15 25 H 0.39 9.32 9.08 -74.06 -0.67 8.65 15 26 H 0.03 1.46 6.98 -2.39 -0.02 1.44 15 27 H 0.06 2.69 4.51 -2.39 -0.01 2.68 15 Total: -1.00 -65.99 220.33 -1.68 -67.67 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -0.27 Total: 12.18 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 2.53 Total: -1.31 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -1.64 Total: -88.02 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -3.97 Total: -37.68 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.67 Total: 47.16 kcal Total: -65.99 -1.68 -67.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610604147.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.290 kcal (2) G-P(sol) polarization free energy of solvation -65.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds