Wall clock time and date at job start Mon Mar 30 2020 02:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81402 * 102.99721 * 2 1 4 4 C 1.53785 * 113.69069 * 85.93680 * 3 2 1 5 5 C 1.53779 * 87.08093 * 139.99057 * 4 3 2 6 6 N 1.46496 * 113.61356 * 220.01890 * 5 4 3 7 7 C 1.36945 * 119.99782 * 252.49951 * 6 5 4 8 8 H 1.08001 * 119.99921 * 359.97438 * 7 6 5 9 9 C 1.38808 * 120.00002 * 180.02562 * 7 6 5 10 10 N 1.31618 * 120.00096 * 179.97438 * 9 7 6 11 11 Si 1.86808 * 119.99995 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47170 * 89.99951 * 11 9 7 13 13 H 1.48496 * 109.46969 * 210.00131 * 11 9 7 14 14 H 1.48499 * 109.47070 * 330.00097 * 11 9 7 15 15 C 1.53781 * 113.61268 * 183.47280 * 3 2 1 16 16 H 1.08996 * 109.47142 * 300.00026 * 1 2 3 17 17 H 1.08995 * 109.46923 * 60.00283 * 1 2 3 18 18 H 1.09006 * 109.46823 * 180.02562 * 1 2 3 19 19 H 1.09002 * 112.85080 * 314.66551 * 3 2 1 20 20 H 1.09003 * 113.60734 * 254.54177 * 4 3 2 21 21 H 1.08996 * 113.61146 * 25.43675 * 4 3 2 22 22 H 1.09005 * 113.69135 * 89.12376 * 5 4 3 23 23 H 0.96999 * 120.00578 * 72.49698 * 6 5 4 24 24 H 0.97002 * 119.99835 * 180.02562 * 10 9 7 25 25 H 1.09005 * 113.61302 * 334.47959 * 15 3 2 26 26 H 1.08993 * 113.62030 * 105.38805 * 15 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 2.2637 2.3921 1.4047 5 6 3.4962 3.1808 0.9317 6 7 4.5493 3.2868 1.9445 7 6 4.7762 4.4817 2.5740 8 1 4.1789 5.3459 2.3234 9 6 5.7744 4.5822 3.5333 10 7 5.9927 5.7307 4.1379 11 14 6.8078 3.0875 3.9661 12 1 8.0028 3.0401 3.0858 13 1 7.2406 3.1787 5.3837 14 1 6.0015 1.8555 3.7730 15 6 3.7310 2.0514 -0.0854 16 1 -0.3633 0.5138 0.8899 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0277 0.0005 19 1 1.6292 2.3388 -0.7144 20 1 1.4022 3.0211 1.6285 21 1 2.4818 1.6742 2.1953 22 1 3.2531 4.1388 0.4719 23 1 5.0859 2.5107 2.1694 24 1 6.6905 5.8011 4.8080 25 1 4.3502 1.2404 0.2981 26 1 4.0540 2.4056 -1.0642 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642843196.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:20 Heat of formation + Delta-G solvation = 29.443951 kcal Electronic energy + Delta-G solvation = -9532.502354 eV Core-core repulsion = 7738.431088 eV Total energy + Delta-G solvation = -1794.071266 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.30899 -33.48507 -30.68370 -28.93326 -25.24726 -24.99600 -22.11416 -19.48104 -17.43929 -16.38962 -15.19991 -14.65319 -14.22285 -13.61167 -13.41969 -12.86686 -12.39756 -12.31845 -12.03394 -11.93593 -10.96998 -10.74970 -10.34617 -10.22106 -10.11354 -9.67246 -9.50537 -8.93044 -7.58694 -7.25618 -5.79900 -3.15929 1.86349 2.71927 3.37922 3.41674 3.45493 4.57561 4.78641 4.99762 5.11534 5.13572 5.20280 5.36787 5.57341 5.66096 5.73702 5.95693 6.12288 6.21692 6.42064 6.52205 6.91045 7.95831 8.39692 9.17156 9.89835 10.09560 11.38170 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.073220 B = 0.009171 C = 0.008749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.315749 B = 3052.362174 C = 3199.576949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.272 6.272 3 C -0.077 4.077 4 C -0.154 4.154 5 C 0.177 3.823 6 N -0.734 5.734 7 C -0.251 4.251 8 H 0.091 0.909 9 C 0.007 3.993 10 N -0.932 5.932 11 Si 0.883 3.117 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.275 1.275 15 C -0.128 4.128 16 H 0.075 0.925 17 H 0.072 0.928 18 H 0.094 0.906 19 H 0.099 0.901 20 H 0.062 0.938 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.364 0.636 24 H 0.260 0.740 25 H 0.084 0.916 26 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.825 -9.644 -8.342 15.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.044 6.044 3 C -0.206 4.206 4 C -0.198 4.198 5 C 0.063 3.937 6 N -0.374 5.374 7 C -0.380 4.380 8 H 0.109 0.891 9 C -0.189 4.189 10 N -0.580 5.580 11 Si 0.713 3.287 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.202 1.202 15 C -0.168 4.168 16 H 0.094 0.906 17 H 0.091 0.909 18 H 0.113 0.887 19 H 0.117 0.883 20 H 0.080 0.920 21 H 0.107 0.893 22 H 0.105 0.895 23 H 0.197 0.803 24 H 0.070 0.930 25 H 0.103 0.897 26 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.142 -10.277 -8.256 15.495 hybrid contribution -0.180 -0.055 0.379 0.423 sum -8.322 -10.332 -7.878 15.430 Atomic orbital electron populations 1.23288 0.95003 1.05793 1.04703 1.86747 1.06739 1.13102 1.97806 1.24600 1.01487 0.91964 1.02570 1.24156 1.01580 1.00113 0.93909 1.21464 0.88205 0.95015 0.88980 1.42740 1.39196 1.10570 1.44893 1.19136 1.14931 0.88341 1.15633 0.89082 1.24684 0.98954 0.96501 0.98788 1.69703 1.35006 1.23588 1.29661 0.86566 0.80920 0.83390 0.77810 1.20955 1.21633 1.20157 1.23376 0.91994 1.00263 1.01183 0.90559 0.90901 0.88720 0.88251 0.91969 0.89335 0.89455 0.80296 0.92984 0.89738 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 10.76 101.05 1.09 -0.16 15 2 S -0.27 -3.84 22.18 -107.50 -2.38 -6.23 15 3 C -0.08 -1.12 4.27 -25.92 -0.11 -1.23 15 4 C -0.15 -2.59 7.47 -25.92 -0.19 -2.79 15 5 C 0.18 3.35 4.48 -67.12 -0.30 3.05 15 6 N -0.73 -17.40 5.21 -52.63 -0.27 -17.67 15 7 C -0.25 -7.04 10.45 -15.06 -0.16 -7.20 15 8 H 0.09 2.72 8.06 -52.49 -0.42 2.29 15 9 C 0.01 0.20 5.50 -17.43 -0.10 0.10 15 10 N -0.93 -29.23 13.97 55.49 0.78 -28.45 15 11 Si 0.88 22.16 27.74 -169.99 -4.71 17.44 15 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 15 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 15 14 H -0.28 -6.57 6.52 56.52 0.37 -6.20 15 15 C -0.13 -2.04 7.42 -25.92 -0.19 -2.23 15 16 H 0.08 0.79 8.14 -51.93 -0.42 0.36 15 17 H 0.07 0.68 8.14 -51.93 -0.42 0.25 15 18 H 0.09 0.85 8.14 -51.92 -0.42 0.43 15 19 H 0.10 1.28 8.14 -51.93 -0.42 0.86 15 20 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 21 H 0.09 1.61 8.10 -51.93 -0.42 1.19 15 22 H 0.09 1.64 8.10 -51.93 -0.42 1.22 15 23 H 0.36 8.54 5.79 -40.82 -0.24 8.30 15 24 H 0.26 7.76 8.31 -40.82 -0.34 7.42 15 25 H 0.08 1.42 8.08 -51.93 -0.42 1.00 15 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 LS Contribution 235.46 15.07 3.55 3.55 Total: -1.00 -30.45 235.46 -6.64 -37.08 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -3.62 Total: 4.73 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 0.04 Total: -10.46 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.50 Total: -46.12 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.44 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -2.38 Total: -6.23 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -30.45 -6.64 -37.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642843196.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.527 kcal (2) G-P(sol) polarization free energy of solvation -30.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds