Wall clock time and date at job start Mon Mar 30 2020 01:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99742 * 2 1 4 4 H 1.48505 * 109.47077 * 90.00212 * 3 2 1 5 5 H 1.48498 * 109.47137 * 210.00343 * 3 2 1 6 6 H 1.48501 * 109.47323 * 330.00600 * 3 2 1 7 7 C 1.37880 * 119.99993 * 179.72899 * 2 1 3 8 8 H 1.08000 * 119.99525 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00171 * 359.97438 * 7 2 1 10 10 N 1.46891 * 109.46958 * 174.93219 * 9 7 2 11 11 C 1.46429 * 111.00425 * 64.88005 * 10 9 7 12 12 C 1.52653 * 110.84994 * 162.90042 * 11 10 9 13 13 C 1.53272 * 109.69850 * 70.10529 * 12 11 10 14 14 S 1.81876 * 108.50279 * 299.06355 * 13 12 11 15 15 C 1.47037 * 111.00251 * 300.08587 * 10 9 7 16 16 H 0.97010 * 119.99641 * 180.02562 * 1 2 3 17 17 H 1.09001 * 109.47106 * 294.93106 * 9 7 2 18 18 H 1.08999 * 109.46673 * 54.92896 * 9 7 2 19 19 H 1.08999 * 109.19902 * 283.25771 * 11 10 9 20 20 H 1.08998 * 109.19904 * 42.59103 * 11 10 9 21 21 H 1.09000 * 109.43138 * 190.16705 * 12 11 10 22 22 H 1.09002 * 109.43536 * 310.07574 * 12 11 10 23 23 H 1.08991 * 109.63739 * 58.76855 * 13 12 11 24 24 H 1.09001 * 109.63071 * 179.16580 * 13 12 11 25 25 H 1.09002 * 109.59737 * 308.62212 * 15 10 9 26 26 H 1.08997 * 109.59977 * 69.10520 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4402 -0.7001 6 1 1.4464 2.6527 -0.6999 7 6 2.0046 -1.1941 0.0056 8 1 3.0846 -1.1940 0.0052 9 6 1.2511 -2.4992 0.0124 10 7 2.2010 -3.6135 -0.1048 11 6 3.0759 -3.6828 1.0673 12 6 3.7577 -5.0457 1.1566 13 6 4.7916 -5.1807 0.0332 14 16 3.9298 -5.0508 -1.5631 15 6 2.9726 -3.5192 -1.3528 16 1 -0.4850 -0.8402 0.0004 17 1 0.6946 -2.5927 0.9450 18 1 0.5578 -2.5227 -0.8283 19 1 3.8365 -2.9056 0.9933 20 1 2.4831 -3.5196 1.9673 21 1 4.2563 -5.1393 2.1213 22 1 3.0099 -5.8325 1.0569 23 1 5.5296 -4.3831 0.1168 24 1 5.2882 -6.1483 0.1068 25 1 2.2919 -3.3948 -2.1950 26 1 3.6515 -2.6681 -1.2995 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685966824.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:53 Heat of formation + Delta-G solvation = -9.711484 kcal Electronic energy + Delta-G solvation = -9954.641494 eV Core-core repulsion = 8158.872321 eV Total energy + Delta-G solvation = -1795.769173 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.47696 -33.56125 -31.96990 -27.17289 -26.59702 -24.06448 -22.05467 -20.19671 -16.97477 -16.47393 -14.94323 -14.23964 -14.04584 -13.81602 -13.67382 -12.89541 -12.73706 -12.18759 -11.35991 -11.15430 -11.03334 -10.81703 -10.63526 -10.22714 -10.03685 -9.54522 -9.21241 -8.48583 -7.46856 -7.21776 -6.49045 -4.24792 2.21109 2.90441 3.34983 3.37873 3.53524 4.42756 4.73734 5.06227 5.14585 5.26639 5.57565 5.76408 5.85921 5.90910 6.02198 6.19674 6.36045 6.56233 6.85608 7.09309 7.58923 7.88175 7.95982 8.34011 8.68349 9.49200 10.88221 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.059743 B = 0.011259 C = 0.011135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.562174 B = 2486.390643 C = 2513.928917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.024 3.976 3 Si 1.068 2.932 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.636 4.636 8 H 0.050 0.950 9 C 0.177 3.823 10 N -0.532 5.532 11 C 0.055 3.945 12 C -0.119 4.119 13 C -0.075 4.075 14 S -0.291 6.291 15 C 0.123 3.877 16 H 0.271 0.729 17 H 0.024 0.976 18 H 0.027 0.973 19 H 0.037 0.963 20 H 0.074 0.926 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.096 0.904 25 H 0.103 0.897 26 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.558 -6.891 0.869 10.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.896 3.104 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.674 4.674 8 H 0.068 0.932 9 C 0.049 3.951 10 N -0.256 5.256 11 C -0.074 4.074 12 C -0.158 4.158 13 C -0.224 4.224 14 S -0.065 6.065 15 C -0.116 4.116 16 H 0.081 0.919 17 H 0.042 0.958 18 H 0.045 0.955 19 H 0.055 0.945 20 H 0.093 0.907 21 H 0.087 0.913 22 H 0.097 0.903 23 H 0.095 0.905 24 H 0.114 0.886 25 H 0.122 0.878 26 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.154 -6.381 -0.057 9.587 hybrid contribution 0.615 -0.048 1.079 1.243 sum 7.769 -6.430 1.022 10.136 Atomic orbital electron populations 1.70773 1.06866 1.30799 1.45564 1.25790 0.96430 1.02690 0.93240 0.83547 0.74727 0.75234 0.76858 1.21361 1.21547 1.20763 1.22542 0.94500 0.93067 1.57332 0.93167 1.19941 0.91326 0.86793 0.97022 1.62487 1.17253 1.45937 0.99934 1.21843 0.96030 0.94701 0.94848 1.21842 0.97507 0.99524 0.96919 1.23366 0.99558 1.04831 0.94642 1.86517 1.56988 1.39450 1.23510 1.23770 0.98302 0.92477 0.97059 0.91872 0.95796 0.95494 0.94513 0.90720 0.91294 0.90275 0.90527 0.88598 0.87838 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.65 55.43 0.76 -26.12 15 2 C 0.02 0.68 5.46 -17.82 -0.10 0.58 15 3 Si 1.07 24.78 29.90 -169.99 -5.08 19.70 15 4 H -0.29 -6.44 7.11 56.52 0.40 -6.04 15 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 15 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 7 C -0.64 -17.27 7.84 -34.44 -0.27 -17.54 15 8 H 0.05 1.37 6.02 -52.49 -0.32 1.05 15 9 C 0.18 4.47 4.42 -4.98 -0.02 4.44 15 10 N -0.53 -11.52 4.75 -240.87 -1.14 -12.66 15 11 C 0.05 1.05 4.71 -4.26 -0.02 1.03 15 12 C -0.12 -1.81 5.94 -26.77 -0.16 -1.97 15 13 C -0.08 -1.11 6.52 37.30 0.24 -0.87 15 14 S -0.29 -5.12 22.50 -107.50 -2.42 -7.54 15 15 C 0.12 2.52 5.53 60.14 0.33 2.86 15 16 H 0.27 8.00 7.19 -40.82 -0.29 7.70 15 17 H 0.02 0.63 7.95 -51.93 -0.41 0.22 15 18 H 0.03 0.72 7.80 -51.93 -0.40 0.31 15 19 H 0.04 0.75 7.05 -51.93 -0.37 0.39 15 20 H 0.07 1.46 7.83 -51.93 -0.41 1.06 15 21 H 0.07 0.88 8.14 -51.93 -0.42 0.45 15 22 H 0.08 1.25 8.14 -51.93 -0.42 0.83 15 23 H 0.08 1.10 8.14 -51.93 -0.42 0.68 15 24 H 0.10 1.19 8.14 -51.93 -0.42 0.77 15 25 H 0.10 2.16 8.09 -51.93 -0.42 1.74 15 26 H 0.06 1.37 6.80 -51.93 -0.35 1.02 15 LS Contribution 223.86 15.07 3.37 3.37 Total: -1.00 -28.73 223.86 -7.97 -36.70 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -3.46 Total: -2.00 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 0.01 Total: -11.46 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: -0.39 Total: -38.78 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.08 Total: 19.70 kcal Atomic # 16 Polarization: -5.12 SS G_CDS: -2.42 Total: -7.54 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -28.73 -7.97 -36.70 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685966824.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.991 kcal (2) G-P(sol) polarization free energy of solvation -28.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds