Wall clock time and date at job start Mon Mar 30 2020 01:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99742 * 2 1 4 4 H 1.48505 * 109.47077 * 90.00212 * 3 2 1 5 5 H 1.48498 * 109.47137 * 210.00343 * 3 2 1 6 6 H 1.48501 * 109.47323 * 330.00600 * 3 2 1 7 7 C 1.37880 * 119.99993 * 179.72899 * 2 1 3 8 8 H 1.08000 * 119.99525 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00171 * 359.97438 * 7 2 1 10 10 N 1.46891 * 109.46958 * 174.93219 * 9 7 2 11 11 C 1.46429 * 111.00425 * 64.88005 * 10 9 7 12 12 C 1.52653 * 110.84994 * 162.90042 * 11 10 9 13 13 C 1.53272 * 109.69850 * 70.10529 * 12 11 10 14 14 S 1.81876 * 108.50279 * 299.06355 * 13 12 11 15 15 C 1.47037 * 111.00251 * 300.08587 * 10 9 7 16 16 H 0.97010 * 119.99641 * 180.02562 * 1 2 3 17 17 H 1.09001 * 109.47106 * 294.93106 * 9 7 2 18 18 H 1.08999 * 109.46673 * 54.92896 * 9 7 2 19 19 H 1.08999 * 109.19902 * 283.25771 * 11 10 9 20 20 H 1.08998 * 109.19904 * 42.59103 * 11 10 9 21 21 H 1.09000 * 109.43138 * 190.16705 * 12 11 10 22 22 H 1.09002 * 109.43536 * 310.07574 * 12 11 10 23 23 H 1.08991 * 109.63739 * 58.76855 * 13 12 11 24 24 H 1.09001 * 109.63071 * 179.16580 * 13 12 11 25 25 H 1.09002 * 109.59737 * 308.62212 * 15 10 9 26 26 H 1.08997 * 109.59977 * 69.10520 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4402 -0.7001 6 1 1.4464 2.6527 -0.6999 7 6 2.0046 -1.1941 0.0056 8 1 3.0846 -1.1940 0.0052 9 6 1.2511 -2.4992 0.0124 10 7 2.2010 -3.6135 -0.1048 11 6 3.0759 -3.6828 1.0673 12 6 3.7577 -5.0457 1.1566 13 6 4.7916 -5.1807 0.0332 14 16 3.9298 -5.0508 -1.5631 15 6 2.9726 -3.5192 -1.3528 16 1 -0.4850 -0.8402 0.0004 17 1 0.6946 -2.5927 0.9450 18 1 0.5578 -2.5227 -0.8283 19 1 3.8365 -2.9056 0.9933 20 1 2.4831 -3.5196 1.9673 21 1 4.2563 -5.1393 2.1213 22 1 3.0099 -5.8325 1.0569 23 1 5.5296 -4.3831 0.1168 24 1 5.2882 -6.1483 0.1068 25 1 2.2919 -3.3948 -2.1950 26 1 3.6515 -2.6681 -1.2995 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685966824.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:53 Heat of formation + Delta-G solvation = -28.726230 kcal Electronic energy + Delta-G solvation = -9955.466036 eV Core-core repulsion = 8158.872321 eV Total energy + Delta-G solvation = -1796.593715 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.17416 -35.41290 -33.66211 -28.98505 -28.24453 -25.98325 -23.71185 -21.81716 -19.04145 -17.97225 -16.54596 -15.98791 -15.77438 -15.60414 -15.10286 -14.38478 -14.19219 -14.03722 -13.27913 -13.07638 -12.60930 -12.45323 -12.18709 -12.00948 -11.59937 -11.35218 -10.84633 -10.63685 -9.25105 -8.71279 -8.70187 -6.49866 0.79591 1.47099 1.47710 1.55460 1.72964 2.49133 3.04614 3.11258 3.77206 3.91240 4.11578 4.36983 4.41071 4.48676 4.60665 4.74625 4.89676 4.91010 4.97790 5.20974 5.63357 5.82210 6.12788 6.23626 6.42657 7.32805 8.63896 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.059743 B = 0.011259 C = 0.011135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.562174 B = 2486.390643 C = 2513.928917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.027 4.027 3 Si 1.115 2.885 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.281 1.281 7 C -0.636 4.636 8 H 0.048 0.952 9 C 0.186 3.814 10 N -0.534 5.534 11 C 0.052 3.948 12 C -0.108 4.108 13 C -0.071 4.071 14 S -0.282 6.282 15 C 0.120 3.880 16 H 0.258 0.742 17 H 0.007 0.993 18 H 0.005 0.995 19 H 0.023 0.977 20 H 0.065 0.935 21 H 0.105 0.895 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.132 0.868 25 H 0.090 0.910 26 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.543 -7.583 1.428 12.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.226 4.226 3 Si 0.937 3.063 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.207 1.207 7 C -0.674 4.674 8 H 0.067 0.933 9 C 0.057 3.943 10 N -0.258 5.258 11 C -0.077 4.077 12 C -0.147 4.147 13 C -0.219 4.219 14 S -0.056 6.056 15 C -0.119 4.119 16 H 0.068 0.932 17 H 0.025 0.975 18 H 0.023 0.977 19 H 0.041 0.959 20 H 0.084 0.916 21 H 0.124 0.876 22 H 0.096 0.904 23 H 0.103 0.897 24 H 0.150 0.850 25 H 0.108 0.892 26 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.154 -7.108 0.504 11.601 hybrid contribution 0.036 0.065 0.918 0.921 sum 9.190 -7.043 1.422 11.666 Atomic orbital electron populations 1.70895 1.07874 1.30113 1.47789 1.27251 0.96487 1.06514 0.92376 0.82940 0.74107 0.71442 0.77812 1.19734 1.19871 1.20675 1.22764 0.94485 0.93909 1.56286 0.93336 1.19662 0.91727 0.87785 0.95087 1.62493 1.17866 1.43915 1.01498 1.21970 0.95261 0.97172 0.93297 1.21775 0.97488 0.96316 0.99092 1.23561 0.99161 1.07146 0.92030 1.86485 1.56379 1.36653 1.26123 1.23625 0.97936 0.94343 0.96012 0.93206 0.97470 0.97734 0.95852 0.91603 0.87649 0.90424 0.89700 0.85027 0.89198 0.93614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.35 13.65 21.45 0.29 -56.06 15 2 C -0.03 -1.51 5.46 84.65 0.46 -1.04 15 3 Si 1.12 49.47 29.90 68.60 2.05 51.52 15 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 15 5 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 6 H -0.28 -12.39 7.11 99.48 0.71 -11.69 15 7 C -0.64 -35.02 7.84 25.60 0.20 -34.82 15 8 H 0.05 2.65 6.02 -2.91 -0.02 2.63 15 9 C 0.19 9.70 4.42 85.56 0.38 10.07 15 10 N -0.53 -23.22 4.75 -915.96 -4.35 -27.57 15 11 C 0.05 1.93 4.71 86.28 0.41 2.34 15 12 C -0.11 -2.93 5.94 30.57 0.18 -2.75 15 13 C -0.07 -1.81 6.52 72.07 0.47 -1.34 15 14 S -0.28 -9.38 22.50 -56.49 -1.27 -10.65 15 15 C 0.12 4.93 5.53 127.66 0.71 5.64 15 16 H 0.26 15.83 7.19 -92.70 -0.67 15.17 15 17 H 0.01 0.40 7.95 -2.39 -0.02 0.38 15 18 H 0.00 0.26 7.80 -2.39 -0.02 0.24 15 19 H 0.02 0.93 7.05 -2.39 -0.02 0.91 15 20 H 0.07 2.55 7.83 -2.39 -0.02 2.53 15 21 H 0.11 2.19 8.14 -2.39 -0.02 2.17 15 22 H 0.08 2.20 8.14 -2.39 -0.02 2.18 15 23 H 0.08 2.10 8.14 -2.39 -0.02 2.08 15 24 H 0.13 2.55 8.14 -2.39 -0.02 2.53 15 25 H 0.09 3.85 8.09 -2.39 -0.02 3.83 15 26 H 0.05 2.00 6.80 -2.39 -0.02 1.99 15 Total: -1.00 -61.78 223.86 0.78 -61.00 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: 1.25 Total: 3.67 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: 2.81 Total: -21.91 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -4.05 Total: -83.63 kcal Atomic # 14 Polarization: 49.47 SS G_CDS: 2.05 Total: 51.52 kcal Atomic # 16 Polarization: -9.38 SS G_CDS: -1.27 Total: -10.65 kcal Total: -61.78 0.78 -61.00 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685966824.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.274 kcal (2) G-P(sol) polarization free energy of solvation -61.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds