Wall clock time and date at job start Mon Mar 30 2020 02:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99855 * 2 1 4 4 H 1.48499 * 109.47082 * 274.89430 * 3 2 1 5 5 H 1.48494 * 109.47135 * 34.89601 * 3 2 1 6 6 H 1.48500 * 109.47164 * 154.89944 * 3 2 1 7 7 C 1.38808 * 120.00318 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00044 * 339.75589 * 7 2 1 9 9 N 1.36937 * 120.00139 * 159.75186 * 7 2 1 10 10 C 1.46918 * 120.63415 * 332.79814 * 9 7 2 11 11 C 1.53187 * 108.78082 * 233.60918 * 10 9 7 12 12 C 1.53041 * 109.31124 * 305.36346 * 11 10 9 13 13 H 1.08997 * 109.46442 * 181.38140 * 12 11 10 14 14 O 1.42902 * 109.46134 * 301.34200 * 12 11 10 15 15 C 1.53041 * 109.53809 * 61.36366 * 12 11 10 16 16 H 1.08992 * 109.49840 * 58.61691 * 15 12 11 17 17 O 1.42900 * 109.49907 * 178.68760 * 15 12 11 18 18 C 1.46942 * 120.60389 * 152.81771 * 9 7 2 19 19 H 0.96996 * 120.00255 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.58860 * 113.81648 * 10 9 7 21 21 H 1.09006 * 109.58836 * 353.39781 * 10 9 7 22 22 H 1.08999 * 109.50556 * 185.41308 * 11 10 9 23 23 H 1.08997 * 109.50003 * 65.30859 * 11 10 9 24 24 H 0.96694 * 114.00067 * 300.06907 * 14 12 11 25 25 H 0.96705 * 114.00523 * 179.97438 * 17 15 12 26 26 H 1.08996 * 109.61534 * 6.62253 * 18 9 7 27 27 H 1.09000 * 109.56006 * 246.19416 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3942 2.1062 -1.3950 5 1 1.5031 2.6206 0.8009 6 1 3.5956 1.4126 0.5939 7 6 2.0103 -1.2021 0.0005 8 1 1.5204 -2.1084 0.3246 9 7 3.3162 -1.2389 -0.4099 10 6 3.8268 -0.2524 -1.3714 11 6 4.4778 -0.9958 -2.5419 12 6 5.5403 -1.9565 -2.0031 13 1 6.0223 -2.4689 -2.8357 14 8 6.5189 -1.2199 -1.2671 15 6 4.8799 -2.9866 -1.0840 16 1 4.1166 -3.5324 -1.6384 17 8 5.8678 -3.9017 -0.6056 18 6 4.2329 -2.2663 0.1031 19 1 -0.4850 0.8400 0.0004 20 1 4.5669 0.3829 -0.8850 21 1 3.0030 0.3592 -1.7398 22 1 4.9452 -0.2768 -3.2148 23 1 3.7179 -1.5600 -3.0824 24 1 6.9788 -0.5474 -1.7879 25 1 5.5192 -4.5839 -0.0155 26 1 3.6774 -2.9837 0.7072 27 1 5.0059 -1.7953 0.7103 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687697268.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:49 Heat of formation + Delta-G solvation = -73.769675 kcal Electronic energy + Delta-G solvation = -12325.982340 eV Core-core repulsion = 10084.682525 eV Total energy + Delta-G solvation = -2241.299816 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.100 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.84437 -35.68361 -35.23451 -32.01973 -30.33597 -29.09379 -25.15822 -22.66695 -21.88353 -19.53152 -17.17922 -16.54564 -16.49118 -15.27601 -14.52990 -14.33459 -14.19758 -13.33095 -12.72293 -12.45867 -12.08467 -11.81543 -11.57732 -11.16077 -10.95153 -10.23890 -10.13044 -9.80741 -9.77633 -9.50408 -9.37181 -8.60695 -6.97570 -5.96792 -3.33155 3.30846 3.48396 3.53844 4.44242 4.52417 4.59538 5.02392 5.26355 5.30812 5.50021 5.64367 5.75117 5.85381 6.14699 6.20669 6.30720 6.54431 6.56984 6.69895 6.92146 7.87788 7.95900 8.05311 8.30370 8.91646 9.69743 10.07959 11.18996 Molecular weight = 187.10amu Principal moments of inertia in cm(-1) A = 0.054611 B = 0.015391 C = 0.013500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.591206 B = 1818.765222 C = 2073.528755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.883 3.117 4 H -0.290 1.290 5 H -0.303 1.303 6 H -0.268 1.268 7 C -0.262 4.262 8 H 0.086 0.914 9 N -0.603 5.603 10 C 0.130 3.870 11 C -0.169 4.169 12 C 0.122 3.878 13 H 0.047 0.953 14 O -0.553 6.553 15 C 0.092 3.908 16 H 0.065 0.935 17 O -0.567 6.567 18 C 0.126 3.874 19 H 0.263 0.737 20 H 0.034 0.966 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.367 0.633 25 H 0.373 0.627 26 H 0.061 0.939 27 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.820 -2.918 -4.251 11.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.714 3.286 4 H -0.217 1.217 5 H -0.231 1.231 6 H -0.192 1.192 7 C -0.390 4.390 8 H 0.104 0.896 9 N -0.328 5.328 10 C 0.005 3.995 11 C -0.208 4.208 12 C 0.063 3.937 13 H 0.065 0.935 14 O -0.357 6.357 15 C 0.032 3.968 16 H 0.083 0.917 17 O -0.371 6.371 18 C 0.000 4.000 19 H 0.073 0.927 20 H 0.052 0.948 21 H 0.089 0.911 22 H 0.082 0.918 23 H 0.094 0.906 24 H 0.213 0.787 25 H 0.219 0.781 26 H 0.079 0.921 27 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.837 -2.862 -4.104 11.036 hybrid contribution 0.108 1.024 -0.215 1.052 sum 9.945 -1.838 -4.319 10.997 Atomic orbital electron populations 1.69826 1.05716 1.26602 1.53031 1.25269 0.95256 0.97654 0.99412 0.86928 0.80302 0.84473 0.76905 1.21745 1.23103 1.19239 1.18934 0.84571 0.94851 1.40686 0.89645 1.44264 1.08282 1.32705 1.47529 1.21266 0.97024 0.92018 0.89206 1.22742 0.99016 0.99412 0.99675 1.21628 0.88370 0.91093 0.92602 0.93499 1.86614 1.54676 1.53461 1.40911 1.22411 0.88953 0.89004 0.96462 0.91690 1.86495 1.37615 1.44535 1.68478 1.21496 0.92898 0.92017 0.93632 0.92733 0.94849 0.91055 0.91841 0.90626 0.78709 0.78090 0.92057 0.94211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.98 13.97 55.49 0.78 -27.21 15 2 C 0.02 0.67 5.24 -17.43 -0.09 0.58 15 3 Si 0.88 22.68 24.35 -169.99 -4.14 18.54 15 4 H -0.29 -7.13 6.70 56.52 0.38 -6.75 15 5 H -0.30 -7.88 7.11 56.52 0.40 -7.47 15 6 H -0.27 -6.85 6.45 56.52 0.36 -6.48 15 7 C -0.26 -7.42 10.04 -15.06 -0.15 -7.58 15 8 H 0.09 2.55 8.05 -52.49 -0.42 2.13 15 9 N -0.60 -14.73 2.77 -172.32 -0.48 -15.21 15 10 C 0.13 2.90 3.95 -3.72 -0.01 2.89 15 11 C -0.17 -2.98 5.80 -26.61 -0.15 -3.13 15 12 C 0.12 2.09 3.45 -26.69 -0.09 2.00 15 13 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 14 O -0.55 -9.55 11.96 -43.66 -0.52 -10.07 15 15 C 0.09 1.66 3.40 -26.61 -0.09 1.57 15 16 H 0.07 1.15 8.14 -51.93 -0.42 0.73 15 17 O -0.57 -9.38 13.24 -43.66 -0.58 -9.96 15 18 C 0.13 2.65 5.90 -3.70 -0.02 2.63 15 19 H 0.26 7.67 8.31 -40.82 -0.34 7.33 15 20 H 0.03 0.76 6.65 -51.93 -0.35 0.41 15 21 H 0.07 1.71 4.50 -51.93 -0.23 1.48 15 22 H 0.06 0.93 8.14 -51.93 -0.42 0.50 15 23 H 0.08 1.34 8.14 -51.93 -0.42 0.92 15 24 H 0.37 4.58 9.08 45.56 0.41 4.99 15 25 H 0.37 4.49 9.08 45.56 0.41 4.90 15 26 H 0.06 1.23 7.93 -51.93 -0.41 0.82 15 27 H 0.04 0.89 7.81 -51.93 -0.41 0.48 15 LS Contribution 218.33 15.07 3.29 3.29 Total: -1.00 -33.22 218.33 -4.14 -37.37 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -1.88 Total: 4.29 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -0.62 Total: -1.05 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.30 Total: -42.41 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -1.10 Total: -20.04 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.14 Total: 18.54 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -33.22 -4.14 -37.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687697268.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.400 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds