Wall clock time and date at job start Mon Mar 30 2020 02:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48494 * 109.47071 * 180.27747 * 3 2 1 5 5 H 1.48506 * 109.47211 * 300.27889 * 3 2 1 6 6 H 1.48493 * 109.47327 * 60.27756 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.52035 * 35.12928 * 10 9 7 12 12 C 1.53088 * 109.52431 * 274.99996 * 10 9 7 13 13 O 1.42897 * 109.41766 * 182.48366 * 12 10 9 14 14 C 1.42909 * 114.09575 * 61.16104 * 13 12 10 15 15 C 1.53101 * 109.41356 * 298.84397 * 14 13 12 16 16 C 1.53175 * 109.16406 * 57.60577 * 15 14 13 17 17 H 1.09009 * 109.54189 * 62.88500 * 16 15 14 18 18 O 1.42897 * 109.54450 * 183.15080 * 16 15 14 19 19 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 20 20 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 21 21 H 1.08992 * 109.48241 * 302.47178 * 12 10 9 22 22 H 1.09005 * 109.47868 * 62.49098 * 12 10 9 23 23 H 1.08998 * 109.47802 * 58.82405 * 14 13 12 24 24 H 1.08996 * 109.48455 * 178.85983 * 14 13 12 25 25 H 1.09001 * 109.52044 * 177.51593 * 15 14 13 26 26 H 1.09001 * 109.51908 * 297.63800 * 15 14 13 27 27 H 0.96696 * 114.00080 * 299.56303 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0068 5 1 1.8864 2.3994 -1.2091 6 1 1.8966 2.3934 1.2158 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9700 -3.5535 0.5763 12 6 2.4171 -4.0339 -1.4511 13 8 3.0804 -5.2995 -1.4594 14 6 2.2901 -6.3757 -0.9498 15 6 1.9258 -6.0928 0.5100 16 6 1.1801 -4.7573 0.5924 17 1 0.2462 -4.8261 0.0344 18 8 0.9005 -4.4495 1.9595 19 1 -0.4850 0.8400 0.0040 20 1 0.3555 -2.3880 -0.0021 21 1 1.5074 -4.0963 -2.0483 22 1 3.0767 -3.2749 -1.8719 23 1 1.3788 -6.4688 -1.5405 24 1 2.8584 -7.3039 -1.0093 25 1 1.2864 -6.8909 0.8871 26 1 2.8351 -6.0408 1.1088 27 1 0.3478 -5.1058 2.4054 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710904101.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:01 Heat of formation + Delta-G solvation = -87.835617 kcal Electronic energy + Delta-G solvation = -11957.956924 eV Core-core repulsion = 9716.047163 eV Total energy + Delta-G solvation = -2241.909761 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.14210 -36.16661 -34.35091 -31.57466 -31.11329 -28.07552 -24.13425 -23.87687 -21.92812 -19.86895 -17.22792 -16.88057 -15.82273 -15.60534 -14.73225 -14.35185 -13.83582 -13.52136 -12.73590 -12.63718 -12.44029 -11.81078 -11.20510 -11.01213 -10.81804 -10.57441 -10.17750 -9.80863 -9.72150 -9.56514 -9.37550 -8.81022 -6.94877 -5.74797 -3.03950 3.45676 3.51319 3.53707 4.21291 4.60300 4.64137 4.98552 5.17169 5.24226 5.47349 5.57555 5.70208 5.82617 5.84783 6.05354 6.09975 6.24372 6.41439 6.63726 6.82839 7.57659 7.73872 8.10124 8.42827 9.54522 10.09238 10.45242 11.47916 Molecular weight = 187.10amu Principal moments of inertia in cm(-1) A = 0.058614 B = 0.011169 C = 0.010074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.589106 B = 2506.262774 C = 2778.689391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.711 5.711 10 C 0.155 3.845 11 H 0.061 0.939 12 C 0.043 3.957 13 O -0.391 6.391 14 C 0.065 3.935 15 C -0.186 4.186 16 C 0.097 3.903 17 H 0.051 0.949 18 O -0.546 6.546 19 H 0.255 0.745 20 H 0.386 0.614 21 H 0.045 0.955 22 H 0.099 0.901 23 H 0.046 0.954 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.009 -11.960 -0.434 12.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.353 5.353 10 C 0.044 3.956 11 H 0.079 0.921 12 C -0.036 4.036 13 O -0.309 6.309 14 C -0.012 4.012 15 C -0.224 4.224 16 C 0.037 3.963 17 H 0.069 0.931 18 O -0.350 6.350 19 H 0.064 0.936 20 H 0.220 0.780 21 H 0.064 0.936 22 H 0.117 0.883 23 H 0.065 0.935 24 H 0.106 0.894 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 2.701 -11.301 -0.645 11.637 hybrid contribution -0.577 0.426 0.255 0.761 sum 2.124 -10.875 -0.390 11.088 Atomic orbital electron populations 1.69682 1.05157 1.25554 1.57647 1.24752 0.95526 0.97729 1.02845 0.86097 0.78837 0.84003 0.77151 1.20475 1.21861 1.21845 1.19319 0.91080 0.83981 1.42732 0.90994 1.42211 1.05737 0.99254 1.88078 1.20813 0.95158 0.86296 0.93309 0.92074 1.23630 0.97391 0.83625 0.98951 1.87878 1.41881 1.17219 1.83926 1.22424 0.95580 0.90691 0.92514 1.22990 1.02187 0.98461 0.98796 1.22191 0.97094 0.93596 0.83404 0.93147 1.86752 1.73378 1.50807 1.24013 0.93560 0.78034 0.93623 0.88291 0.93541 0.89352 0.91312 0.90374 0.79191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.72 13.06 55.49 0.72 -28.00 15 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 15 3 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 15 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 15 6 H -0.29 -7.37 7.11 56.52 0.40 -6.97 15 7 C -0.24 -6.87 9.93 -15.06 -0.15 -7.02 15 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 15 9 N -0.71 -18.59 5.05 -53.29 -0.27 -18.85 15 10 C 0.16 3.32 2.65 -67.79 -0.18 3.14 15 11 H 0.06 1.41 8.08 -51.93 -0.42 0.99 15 12 C 0.04 0.83 6.43 37.20 0.24 1.07 15 13 O -0.39 -6.81 10.77 -35.23 -0.38 -7.19 15 14 C 0.07 0.89 6.84 37.21 0.25 1.14 15 15 C -0.19 -2.55 5.77 -26.59 -0.15 -2.71 15 16 C 0.10 1.71 3.06 -26.55 -0.08 1.63 15 17 H 0.05 0.87 8.14 -51.92 -0.42 0.45 15 18 O -0.55 -10.08 13.25 -35.23 -0.47 -10.55 15 19 H 0.25 7.54 8.31 -40.82 -0.34 7.20 15 20 H 0.39 10.70 7.80 -40.82 -0.32 10.38 15 21 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 22 H 0.10 1.99 8.14 -51.93 -0.42 1.56 15 23 H 0.05 0.59 8.14 -51.93 -0.42 0.16 15 24 H 0.09 0.98 8.14 -51.93 -0.42 0.56 15 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 26 H 0.08 1.13 8.14 -51.93 -0.42 0.71 15 27 H 0.36 4.64 9.09 45.56 0.41 5.05 15 LS Contribution 231.27 15.07 3.49 3.49 Total: -1.00 -32.45 231.27 -4.92 -37.37 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -2.83 Total: 9.14 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -0.17 Total: -3.20 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 0.46 Total: -46.85 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.85 Total: -17.74 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -32.45 -4.92 -37.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710904101.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.463 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds