Wall clock time and date at job start Mon Mar 30 2020 02:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48494 * 109.47071 * 180.27747 * 3 2 1 5 5 H 1.48506 * 109.47211 * 300.27889 * 3 2 1 6 6 H 1.48493 * 109.47327 * 60.27756 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.52035 * 35.12928 * 10 9 7 12 12 C 1.53088 * 109.52431 * 274.99996 * 10 9 7 13 13 O 1.42897 * 109.41766 * 182.48366 * 12 10 9 14 14 C 1.42909 * 114.09575 * 61.16104 * 13 12 10 15 15 C 1.53101 * 109.41356 * 298.84397 * 14 13 12 16 16 C 1.53175 * 109.16406 * 57.60577 * 15 14 13 17 17 H 1.09009 * 109.54189 * 62.88500 * 16 15 14 18 18 O 1.42897 * 109.54450 * 183.15080 * 16 15 14 19 19 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 20 20 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 21 21 H 1.08992 * 109.48241 * 302.47178 * 12 10 9 22 22 H 1.09005 * 109.47868 * 62.49098 * 12 10 9 23 23 H 1.08998 * 109.47802 * 58.82405 * 14 13 12 24 24 H 1.08996 * 109.48455 * 178.85983 * 14 13 12 25 25 H 1.09001 * 109.52044 * 177.51593 * 15 14 13 26 26 H 1.09001 * 109.51908 * 297.63800 * 15 14 13 27 27 H 0.96696 * 114.00080 * 299.56303 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0068 5 1 1.8864 2.3994 -1.2091 6 1 1.8966 2.3934 1.2158 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9700 -3.5535 0.5763 12 6 2.4171 -4.0339 -1.4511 13 8 3.0804 -5.2995 -1.4594 14 6 2.2901 -6.3757 -0.9498 15 6 1.9258 -6.0928 0.5100 16 6 1.1801 -4.7573 0.5924 17 1 0.2462 -4.8261 0.0344 18 8 0.9005 -4.4495 1.9595 19 1 -0.4850 0.8400 0.0040 20 1 0.3555 -2.3880 -0.0021 21 1 1.5074 -4.0963 -2.0483 22 1 3.0767 -3.2749 -1.8719 23 1 1.3788 -6.4688 -1.5405 24 1 2.8584 -7.3039 -1.0093 25 1 1.2864 -6.8909 0.8871 26 1 2.8351 -6.0408 1.1088 27 1 0.3478 -5.1058 2.4054 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710904101.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:01 Heat of formation + Delta-G solvation = -114.826047 kcal Electronic energy + Delta-G solvation = -11959.127317 eV Core-core repulsion = 9716.047163 eV Total energy + Delta-G solvation = -2243.080154 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.54069 -37.56685 -36.26465 -33.45963 -32.47629 -29.88271 -26.02930 -25.29685 -23.47110 -21.37593 -19.22923 -18.35822 -17.38775 -16.93810 -16.39865 -15.93072 -15.58144 -15.11192 -14.43162 -14.02394 -13.92940 -13.37528 -12.99894 -12.87423 -12.45199 -12.14261 -12.05327 -11.71433 -11.34860 -11.12264 -10.83828 -10.58902 -9.04625 -7.97079 -5.26601 1.46317 1.47555 1.57838 2.52969 2.92784 3.29500 3.38564 3.69804 3.87362 4.02665 4.18423 4.28293 4.32529 4.60940 4.72718 4.81447 4.88288 4.95978 5.12797 5.30058 5.46258 6.19408 6.30013 6.98501 7.30531 8.01861 8.27637 9.26568 Molecular weight = 187.10amu Principal moments of inertia in cm(-1) A = 0.058614 B = 0.011169 C = 0.010074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.589106 B = 2506.262774 C = 2778.689391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.073 4.073 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.723 5.723 10 C 0.147 3.853 11 H 0.038 0.962 12 C 0.059 3.941 13 O -0.401 6.401 14 C 0.055 3.945 15 C -0.173 4.173 16 C 0.099 3.901 17 H 0.055 0.945 18 O -0.575 6.575 19 H 0.252 0.748 20 H 0.375 0.625 21 H 0.049 0.951 22 H 0.082 0.918 23 H 0.061 0.939 24 H 0.122 0.878 25 H 0.109 0.891 26 H 0.070 0.930 27 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.493 -13.364 -0.497 13.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.377 4.377 8 H 0.091 0.909 9 N -0.364 5.364 10 C 0.037 3.963 11 H 0.056 0.944 12 C -0.020 4.020 13 O -0.319 6.319 14 C -0.021 4.021 15 C -0.211 4.211 16 C 0.040 3.960 17 H 0.073 0.927 18 O -0.383 6.383 19 H 0.061 0.939 20 H 0.207 0.793 21 H 0.067 0.933 22 H 0.100 0.900 23 H 0.080 0.920 24 H 0.140 0.860 25 H 0.127 0.873 26 H 0.089 0.911 27 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 3.212 -12.767 -0.704 13.183 hybrid contribution -0.718 0.732 0.310 1.071 sum 2.494 -12.035 -0.394 12.297 Atomic orbital electron populations 1.69829 1.06635 1.26098 1.59346 1.25578 0.96430 1.01107 1.03441 0.85052 0.78170 0.79616 0.76791 1.19153 1.21603 1.22012 1.19661 0.91343 0.85258 1.41413 0.90919 1.42336 1.05302 1.00404 1.88387 1.21045 0.94654 0.85944 0.94646 0.94432 1.23167 0.97151 0.84645 0.97051 1.87868 1.42707 1.17035 1.84315 1.22809 0.96580 0.90414 0.92299 1.22893 1.02039 0.97102 0.99068 1.22113 0.96979 0.93978 0.82976 0.92688 1.86680 1.74303 1.52758 1.24525 0.93907 0.79334 0.93253 0.89989 0.92036 0.85965 0.87289 0.91124 0.76356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.63 13.06 21.65 0.28 -60.35 15 2 C -0.07 -4.33 5.50 84.86 0.47 -3.86 15 3 Si 0.98 47.32 29.55 68.60 2.03 49.35 15 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 15 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 15 6 H -0.29 -14.20 7.11 99.48 0.71 -13.49 15 7 C -0.25 -14.20 9.93 84.03 0.83 -13.37 15 8 H 0.07 4.10 7.83 -2.91 -0.02 4.08 15 9 N -0.72 -38.41 5.05 -322.50 -1.63 -40.04 15 10 C 0.15 6.27 2.65 45.08 0.12 6.39 15 11 H 0.04 1.76 8.08 -2.39 -0.02 1.74 15 12 C 0.06 2.25 6.43 72.01 0.46 2.72 15 13 O -0.40 -13.19 10.77 -148.98 -1.60 -14.80 15 14 C 0.06 1.30 6.84 72.02 0.49 1.80 15 15 C -0.17 -4.18 5.77 30.69 0.18 -4.00 15 16 C 0.10 3.34 3.06 30.71 0.09 3.43 15 17 H 0.06 1.80 8.14 -2.38 -0.02 1.78 15 18 O -0.58 -20.58 13.25 -148.98 -1.97 -22.55 15 19 H 0.25 15.18 8.31 -92.71 -0.77 14.41 15 20 H 0.37 21.21 7.80 -92.71 -0.72 20.49 15 21 H 0.05 1.82 8.14 -2.39 -0.02 1.80 15 22 H 0.08 3.33 8.14 -2.38 -0.02 3.31 15 23 H 0.06 1.31 8.14 -2.39 -0.02 1.29 15 24 H 0.12 2.13 8.14 -2.39 -0.02 2.11 15 25 H 0.11 1.82 8.14 -2.39 -0.02 1.80 15 26 H 0.07 1.85 8.14 -2.39 -0.02 1.83 15 27 H 0.39 9.10 9.09 -74.06 -0.67 8.43 15 Total: -1.00 -69.90 231.27 -0.47 -70.37 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: -0.22 Total: 24.92 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 2.65 Total: -6.90 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -1.35 Total: -100.39 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -3.58 Total: -37.35 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -69.90 -0.47 -70.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710904101.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.456 kcal (2) G-P(sol) polarization free energy of solvation -69.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds