Wall clock time and date at job start Mon Mar 30 2020 02:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86806 * 119.99659 * 2 1 4 4 H 1.48495 * 109.46695 * 269.99583 * 3 2 1 5 5 H 1.48495 * 109.47006 * 29.99845 * 3 2 1 6 6 H 1.48500 * 109.46695 * 149.99876 * 3 2 1 7 7 C 1.38805 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00292 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99918 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99994 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.57245 * 34.83788 * 10 9 7 12 12 C 1.53094 * 109.51762 * 274.68488 * 10 9 7 13 13 O 1.42904 * 109.41442 * 297.69917 * 12 10 9 14 14 C 1.42910 * 114.09823 * 298.84501 * 13 12 10 15 15 C 1.53101 * 109.48396 * 61.11129 * 14 13 12 16 16 C 1.53170 * 109.52725 * 154.99772 * 10 9 7 17 17 H 1.08995 * 109.54931 * 182.88153 * 16 10 9 18 18 O 1.42903 * 109.54387 * 303.05956 * 16 10 9 19 19 H 0.96994 * 120.00182 * 359.97438 * 1 2 3 20 20 H 0.96991 * 120.00060 * 359.97438 * 9 7 2 21 21 H 1.08995 * 109.48315 * 57.68425 * 12 10 9 22 22 H 1.09007 * 109.47940 * 177.72330 * 12 10 9 23 23 H 1.08995 * 109.47888 * 181.14141 * 14 13 12 24 24 H 1.08994 * 109.47774 * 301.16334 * 14 13 12 25 25 H 1.09005 * 109.59586 * 182.57962 * 15 14 13 26 26 H 1.09000 * 109.45784 * 62.38721 * 15 14 13 27 27 H 0.96700 * 114.00311 * 179.82175 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9702 -3.5513 0.5890 12 6 2.4170 -4.0414 -1.4360 13 8 1.2182 -4.2357 -2.1892 14 6 0.3804 -5.2817 -1.6929 15 6 -0.0604 -4.9489 -0.2650 16 6 1.1806 -4.7540 0.6116 17 1 1.7431 -5.6864 0.6596 18 8 0.7800 -4.3691 1.9283 19 1 -0.4850 0.8400 0.0004 20 1 0.3557 -2.3881 0.0005 21 1 3.0060 -3.2442 -1.8894 22 1 2.9969 -4.9645 -1.4314 23 1 -0.4978 -5.3778 -2.3314 24 1 0.9336 -6.2208 -1.6918 25 1 -0.6620 -5.7667 0.1319 26 1 -0.6496 -4.0318 -0.2713 27 1 0.2184 -5.0180 2.3740 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710904102.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:03 Heat of formation + Delta-G solvation = -111.399628 kcal Electronic energy + Delta-G solvation = -12172.492822 eV Core-core repulsion = 9929.561249 eV Total energy + Delta-G solvation = -2242.931573 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.54346 -37.45287 -35.99068 -33.36022 -32.33407 -30.00801 -25.88136 -25.20649 -24.05315 -20.53080 -19.38418 -18.29189 -17.08372 -16.92902 -16.46028 -15.79536 -15.57733 -15.31631 -14.31291 -13.89597 -13.84635 -13.20248 -12.98449 -12.80653 -12.51330 -12.12153 -11.90007 -11.67483 -11.28577 -11.07808 -10.75546 -10.43602 -8.89645 -7.90566 -5.16839 1.45688 1.48902 1.56710 2.57573 3.07548 3.39838 3.43748 3.82328 3.96015 4.04986 4.13877 4.26620 4.51890 4.65203 4.70640 4.82783 4.90032 5.02083 5.17148 5.36440 5.49415 6.29857 6.45452 7.03130 7.36923 8.15204 8.38244 9.33679 Molecular weight = 187.10amu Principal moments of inertia in cm(-1) A = 0.050731 B = 0.012807 C = 0.011936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.797335 B = 2185.766206 C = 2345.265539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.082 4.082 3 Si 0.975 3.025 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.238 4.238 8 H 0.075 0.925 9 N -0.717 5.717 10 C 0.133 3.867 11 H 0.052 0.948 12 C 0.053 3.947 13 O -0.403 6.403 14 C 0.061 3.939 15 C -0.181 4.181 16 C 0.102 3.898 17 H 0.089 0.911 18 O -0.577 6.577 19 H 0.248 0.752 20 H 0.373 0.627 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.100 0.900 24 H 0.078 0.922 25 H 0.105 0.895 26 H 0.043 0.957 27 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.390 -13.474 -0.578 13.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.274 4.274 3 Si 0.804 3.196 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.370 4.370 8 H 0.093 0.907 9 N -0.357 5.357 10 C 0.023 3.977 11 H 0.069 0.931 12 C -0.026 4.026 13 O -0.322 6.322 14 C -0.016 4.016 15 C -0.219 4.219 16 C 0.042 3.958 17 H 0.106 0.894 18 O -0.384 6.384 19 H 0.057 0.943 20 H 0.206 0.794 21 H 0.093 0.907 22 H 0.094 0.906 23 H 0.118 0.882 24 H 0.096 0.904 25 H 0.123 0.877 26 H 0.061 0.939 27 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 2.855 -12.729 -0.862 13.073 hybrid contribution -0.430 0.624 0.390 0.852 sum 2.425 -12.104 -0.472 12.354 Atomic orbital electron populations 1.69850 1.06717 1.25747 1.59993 1.25575 0.96409 1.01141 1.04228 0.85112 0.77646 0.79486 0.77362 1.21441 1.22299 1.19387 1.19680 0.91385 0.85533 1.40384 0.90722 1.42305 1.05339 1.00167 1.87922 1.21237 0.95093 0.86547 0.94805 0.93052 1.23216 0.86396 1.00459 0.92569 1.87931 1.34179 1.56508 1.53549 1.22684 0.95010 0.90207 0.93673 1.22856 0.98889 1.02510 0.97659 1.22114 0.94789 0.96549 0.82302 0.89369 1.86704 1.72342 1.50404 1.28921 0.94281 0.79395 0.90747 0.90589 0.88160 0.90409 0.87714 0.93858 0.76496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.99 13.06 21.65 0.28 -62.71 15 2 C -0.08 -4.97 5.50 84.86 0.47 -4.50 15 3 Si 0.97 48.44 29.55 68.60 2.03 50.47 15 4 H -0.29 -13.97 7.11 99.48 0.71 -13.27 15 5 H -0.30 -14.78 7.11 99.48 0.71 -14.07 15 6 H -0.27 -12.58 7.11 99.48 0.71 -11.87 15 7 C -0.24 -13.99 9.93 84.03 0.83 -13.15 15 8 H 0.07 4.18 7.83 -2.91 -0.02 4.15 15 9 N -0.72 -38.66 4.77 -322.52 -1.54 -40.20 15 10 C 0.13 5.48 2.85 45.08 0.13 5.61 15 11 H 0.05 2.17 8.08 -2.39 -0.02 2.15 15 12 C 0.05 1.92 6.46 72.01 0.47 2.38 15 13 O -0.40 -15.41 10.67 -148.98 -1.59 -17.00 15 14 C 0.06 1.70 6.84 72.02 0.49 2.19 15 15 C -0.18 -5.41 5.58 30.69 0.17 -5.24 15 16 C 0.10 3.29 3.28 30.71 0.10 3.39 15 17 H 0.09 2.15 8.14 -2.39 -0.02 2.13 15 18 O -0.58 -20.48 13.14 -148.98 -1.96 -22.44 15 19 H 0.25 15.56 8.31 -92.71 -0.77 14.79 15 20 H 0.37 21.96 6.28 -92.71 -0.58 21.38 15 21 H 0.07 2.97 8.14 -2.39 -0.02 2.95 15 22 H 0.08 2.07 8.14 -2.38 -0.02 2.05 15 23 H 0.10 2.51 8.14 -2.39 -0.02 2.49 15 24 H 0.08 1.62 8.14 -2.39 -0.02 1.60 15 25 H 0.10 2.25 8.14 -2.38 -0.02 2.23 15 26 H 0.04 1.70 6.74 -2.39 -0.02 1.68 15 27 H 0.39 9.06 9.09 -74.06 -0.67 8.39 15 Total: -1.00 -74.23 228.13 -0.19 -74.43 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: -0.08 Total: 26.78 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 2.66 Total: -9.33 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -1.26 Total: -102.91 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -3.55 Total: -39.44 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 2.03 Total: 50.47 kcal Total: -74.23 -0.19 -74.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710904102.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.972 kcal (2) G-P(sol) polarization free energy of solvation -74.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds