Wall clock time and date at job start Mon Mar 30 2020 02:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37098 * 119.99686 * 2 1 4 4 H 1.08001 * 119.99661 * 205.16018 * 3 2 1 5 5 C 1.38947 * 120.00649 * 25.16258 * 3 2 1 6 6 N 1.31412 * 119.99780 * 12.02329 * 5 3 2 7 7 Si 1.86794 * 120.00226 * 192.01866 * 5 3 2 8 8 H 1.48495 * 109.47435 * 359.97438 * 7 5 3 9 9 H 1.48507 * 109.47050 * 120.00273 * 7 5 3 10 10 H 1.48499 * 109.47123 * 239.99927 * 7 5 3 11 11 C 1.34769 * 119.99967 * 179.97438 * 2 1 3 12 12 O 1.21298 * 120.00311 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00338 * 0.02562 * 11 2 1 14 14 F 1.39901 * 115.54457 * 335.57963 * 13 11 2 15 15 C 1.52997 * 117.50216 * 121.24720 * 13 11 2 16 16 C 1.52999 * 117.50019 * 189.91320 * 13 11 2 17 17 H 1.09000 * 109.46668 * 264.68644 * 1 2 3 18 18 H 1.09002 * 109.46634 * 24.67885 * 1 2 3 19 19 H 1.08996 * 109.46676 * 144.67958 * 1 2 3 20 20 H 0.96999 * 120.00561 * 180.02562 * 6 5 3 21 21 H 1.09002 * 117.50014 * 215.00023 * 15 13 11 22 22 H 1.08994 * 117.49693 * 0.02619 * 15 13 11 23 23 H 1.08997 * 117.50127 * 359.96869 * 16 13 11 24 24 H 1.09007 * 117.49705 * 144.97605 * 16 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1536 1.2317 -0.3977 5 6 1.5547 2.3336 0.5116 6 7 0.4420 2.2423 1.2048 7 14 2.3354 4.0043 0.2142 8 1 3.5737 3.8364 -0.5880 9 1 1.3817 4.8723 -0.5223 10 1 2.6717 4.6325 1.5171 11 6 2.1389 -1.1671 0.0005 12 8 3.3519 -1.1672 0.0001 13 6 1.3855 -2.4723 0.0005 14 9 0.0883 -2.4200 0.5219 15 6 1.6424 -3.4363 -1.1594 16 6 2.1900 -3.7524 0.2348 17 1 -0.3633 -0.0952 1.0233 18 1 -0.3633 0.9338 -0.4291 19 1 -0.3632 -0.8385 -0.5941 20 1 0.0258 3.0425 1.5617 21 1 0.8007 -4.0300 -1.5162 22 1 2.3566 -3.1268 -1.9222 23 1 3.2643 -3.6507 0.3883 24 1 1.7086 -4.5539 0.7953 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843780844.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:07 Heat of formation + Delta-G solvation = -63.511716 kcal Electronic energy + Delta-G solvation = -11758.363330 eV Core-core repulsion = 9394.048028 eV Total energy + Delta-G solvation = -2364.315303 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 187.075 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -48.81462 -40.42200 -37.43497 -36.07614 -33.69644 -28.49772 -27.12435 -24.43227 -23.59602 -20.76302 -19.19142 -18.39116 -17.20578 -16.86756 -16.22928 -15.87067 -15.38927 -15.23194 -14.50325 -14.05963 -13.81160 -13.29060 -13.11096 -12.65775 -12.51890 -12.35143 -12.12926 -12.00565 -11.08985 -10.98408 -10.47555 -9.78389 -8.41826 -6.10872 1.29701 1.39274 1.54652 1.66296 2.20352 2.67158 2.68236 3.04447 3.17776 3.67999 3.83130 3.92602 4.58316 4.59261 4.83030 4.89606 4.93369 5.11168 5.27988 5.36899 5.99894 6.34798 7.01486 7.30015 7.83077 8.61623 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.070354 B = 0.012778 C = 0.011387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.892174 B = 2190.690769 C = 2458.267562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.449 5.449 3 C -0.353 4.353 4 H 0.079 0.921 5 C -0.003 4.003 6 N -0.895 5.895 7 Si 0.999 3.001 8 H -0.269 1.269 9 H -0.262 1.262 10 H -0.274 1.274 11 C 0.449 3.551 12 O -0.616 6.616 13 C -0.014 4.014 14 F -0.175 7.175 15 C -0.138 4.138 16 C -0.140 4.140 17 H 0.039 0.961 18 H 0.058 0.942 19 H 0.065 0.935 20 H 0.277 0.723 21 H 0.144 0.856 22 H 0.108 0.892 23 H 0.107 0.893 24 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.224 -6.704 -3.362 7.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.165 5.165 3 C -0.480 4.480 4 H 0.097 0.903 5 C -0.205 4.205 6 N -0.532 5.532 7 Si 0.822 3.178 8 H -0.193 1.193 9 H -0.187 1.187 10 H -0.199 1.199 11 C 0.237 3.763 12 O -0.504 6.504 13 C -0.036 4.036 14 F -0.156 7.156 15 C -0.176 4.176 16 C -0.178 4.178 17 H 0.058 0.942 18 H 0.077 0.923 19 H 0.083 0.917 20 H 0.087 0.913 21 H 0.162 0.838 22 H 0.127 0.873 23 H 0.125 0.875 24 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.866 -6.521 -3.245 7.519 hybrid contribution 0.010 0.995 0.274 1.032 sum -1.857 -5.525 -2.972 6.543 Atomic orbital electron populations 1.21603 0.79228 1.00607 1.00459 1.43837 1.06967 1.04710 1.60985 1.19788 1.01220 0.85852 1.41173 0.90344 1.26295 0.96884 1.03548 0.93777 1.70101 1.19790 1.31304 1.32039 0.84801 0.78421 0.76236 0.78382 1.19331 1.18706 1.19912 1.19871 0.87488 0.84929 0.84001 1.90483 1.14547 1.87120 1.58246 1.21139 0.81031 0.92562 1.08861 1.92785 1.37558 1.97215 1.87998 1.23752 1.04377 0.97774 0.91698 1.23675 1.00969 0.93848 0.99302 0.94223 0.92341 0.91671 0.91342 0.83839 0.87337 0.87471 0.84247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 6.09 7.43 127.77 0.95 7.03 14 2 N -0.45 -24.90 3.01 -658.89 -1.98 -26.89 14 3 C -0.35 -20.78 9.23 84.04 0.78 -20.00 14 4 H 0.08 4.83 7.46 -2.91 -0.02 4.81 14 5 C 0.00 -0.14 5.05 84.93 0.43 0.29 14 6 N -0.89 -49.23 10.85 21.66 0.24 -48.99 14 7 Si 1.00 42.81 29.57 68.60 2.03 44.84 14 8 H -0.27 -11.52 7.11 99.48 0.71 -10.81 14 9 H -0.26 -10.48 7.11 99.48 0.71 -9.78 14 10 H -0.27 -11.40 7.11 99.48 0.71 -10.69 14 11 C 0.45 23.49 7.39 87.66 0.65 24.13 14 12 O -0.62 -35.64 16.03 -3.08 -0.05 -35.69 14 13 C -0.01 -0.56 3.19 -11.54 -0.04 -0.60 14 14 F -0.18 -6.96 14.15 44.97 0.64 -6.32 14 15 C -0.14 -3.98 10.22 30.62 0.31 -3.66 14 16 C -0.14 -4.25 10.03 30.62 0.31 -3.94 14 17 H 0.04 2.03 7.70 -2.39 -0.02 2.01 14 18 H 0.06 2.95 6.76 -2.39 -0.02 2.94 14 19 H 0.06 2.77 6.10 -2.39 -0.01 2.75 14 20 H 0.28 14.05 8.31 -92.71 -0.77 13.28 14 21 H 0.14 3.05 8.14 -2.39 -0.02 3.03 14 22 H 0.11 3.19 8.14 -2.39 -0.02 3.17 14 23 H 0.11 3.50 7.71 -2.39 -0.02 3.48 14 24 H 0.14 3.23 8.14 -2.38 -0.02 3.21 14 Total: -1.00 -67.87 215.93 5.45 -62.42 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 1.20 Total: 7.39 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 3.38 Total: 3.24 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -1.75 Total: -75.88 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -0.05 Total: -35.69 kcal Atomic # 9 Polarization: -6.96 SS G_CDS: 0.64 Total: -6.32 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -67.87 5.45 -62.42 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843780844.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.097 kcal (2) G-P(sol) polarization free energy of solvation -67.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds