Wall clock time and date at job start Mon Mar 30 2020 02:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 11 11 O 1.42897 * 109.47511 * 60.00150 * 9 7 2 12 12 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 13 13 H 1.08997 * 110.69568 * 308.31483 * 12 9 7 14 14 C 1.54252 * 110.78853 * 185.00060 * 12 9 7 15 15 C 1.52335 * 112.58916 * 217.19951 * 14 12 9 16 16 C 1.54259 * 112.58407 * 359.97438 * 15 14 12 17 17 S 1.83947 * 102.58370 * 24.53121 * 16 15 14 18 18 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 19 19 H 0.96698 * 114.00131 * 59.99542 * 11 9 7 20 20 H 1.08998 * 108.87228 * 338.01451 * 14 12 9 21 21 H 1.09001 * 108.87559 * 96.37716 * 14 12 9 22 22 H 1.08995 * 108.87126 * 120.81849 * 15 14 12 23 23 H 1.09005 * 108.86706 * 239.18470 * 15 14 12 24 24 H 1.08996 * 110.79047 * 142.80737 * 16 15 14 25 25 H 1.09007 * 110.78470 * 266.25726 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 8 0.4300 -2.5751 -1.1665 12 6 2.2453 -3.6620 0.0018 13 1 2.9768 -3.5444 -0.7977 14 6 1.5092 -5.0118 -0.1238 15 6 2.1547 -6.1102 0.7112 16 6 3.3933 -5.6151 1.4860 17 16 3.0766 -3.8093 1.6360 18 1 -0.4850 -0.8401 -0.0004 19 1 0.9224 -2.5299 -1.9975 20 1 0.4771 -4.8821 0.2016 21 1 1.5101 -5.3178 -1.1700 22 1 1.4213 -6.4889 1.4231 23 1 2.4544 -6.9246 0.0515 24 1 3.4463 -6.0815 2.4697 25 1 4.3049 -5.8021 0.9184 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535764685.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:08 Heat of formation + Delta-G solvation = -93.248179 kcal Electronic energy + Delta-G solvation = -9999.493003 eV Core-core repulsion = 8102.382745 eV Total energy + Delta-G solvation = -1897.110258 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.74619 -36.24825 -34.30846 -31.49398 -28.10024 -25.86348 -23.59631 -21.18844 -19.37089 -17.93414 -17.21323 -16.13827 -15.78691 -15.63775 -15.00321 -14.46878 -14.26127 -13.79619 -13.06460 -12.65678 -12.57421 -12.31238 -12.19442 -11.94199 -11.55267 -11.28688 -10.75917 -10.64807 -10.17622 -8.73110 -8.60702 -6.46875 0.96431 1.50809 1.53928 1.58736 1.78322 2.53982 3.15541 3.57065 3.82603 3.96117 4.00602 4.24263 4.31452 4.47552 4.61642 4.77597 5.01405 5.08503 5.15799 5.37397 5.80799 6.11128 6.54405 7.08971 7.46395 8.74322 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.059661 B = 0.012839 C = 0.011149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.209017 B = 2180.256838 C = 2510.892530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.017 4.017 3 Si 1.113 2.887 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.283 1.283 7 C -0.648 4.648 8 H 0.047 0.953 9 C 0.234 3.766 10 H 0.022 0.978 11 O -0.583 6.583 12 C -0.032 4.032 13 H 0.083 0.917 14 C -0.116 4.116 15 C -0.118 4.118 16 C -0.060 4.060 17 S -0.351 6.351 18 H 0.267 0.733 19 H 0.367 0.633 20 H 0.055 0.945 21 H 0.085 0.915 22 H 0.078 0.922 23 H 0.101 0.899 24 H 0.119 0.881 25 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.213 -10.957 -0.517 12.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.934 3.066 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.208 1.208 7 C -0.686 4.686 8 H 0.065 0.935 9 C 0.176 3.824 10 H 0.039 0.961 11 O -0.389 6.389 12 C -0.161 4.161 13 H 0.101 0.899 14 C -0.156 4.156 15 C -0.157 4.157 16 C -0.207 4.207 17 S -0.126 6.126 18 H 0.077 0.923 19 H 0.214 0.786 20 H 0.074 0.926 21 H 0.103 0.897 22 H 0.097 0.903 23 H 0.119 0.881 24 H 0.138 0.862 25 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.797 -8.594 0.824 10.399 hybrid contribution 0.169 -2.157 -1.116 2.435 sum 5.965 -10.751 -0.293 12.299 Atomic orbital electron populations 1.70788 1.07917 1.31120 1.45750 1.27242 0.96504 1.06373 0.91744 0.83006 0.74184 0.71523 0.77856 1.19101 1.20225 1.20821 1.22733 0.94359 0.93603 1.57861 0.93505 1.19201 0.87539 0.91066 0.84585 0.96063 1.86464 1.39359 1.96447 1.16655 1.24461 0.99027 0.98963 0.93608 0.89863 1.22050 0.99790 0.91775 1.01947 1.21979 0.96225 0.98308 0.99179 1.24282 1.01418 0.90059 1.04966 1.88387 1.78449 1.15796 1.29935 0.92273 0.78649 0.92641 0.89671 0.90289 0.88091 0.86241 0.88082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.81 13.53 21.45 0.29 -57.52 15 2 C -0.02 -0.97 5.40 84.66 0.46 -0.52 15 3 Si 1.11 51.33 29.90 68.60 2.05 53.38 15 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 15 5 H -0.28 -12.20 7.11 99.48 0.71 -11.50 15 6 H -0.28 -13.00 7.11 99.48 0.71 -12.29 15 7 C -0.65 -36.86 8.48 25.60 0.22 -36.65 15 8 H 0.05 2.67 7.74 -2.91 -0.02 2.65 15 9 C 0.23 12.05 1.86 29.85 0.06 12.10 15 10 H 0.02 1.26 8.00 -2.39 -0.02 1.24 15 11 O -0.58 -29.01 11.57 -148.98 -1.72 -30.73 15 12 C -0.03 -1.30 2.96 31.02 0.09 -1.21 15 13 H 0.08 3.35 8.14 -2.39 -0.02 3.34 15 14 C -0.12 -3.73 5.51 30.80 0.17 -3.56 15 15 C -0.12 -2.84 6.30 30.80 0.19 -2.65 15 16 C -0.06 -1.52 7.46 72.41 0.54 -0.98 15 17 S -0.35 -14.03 22.46 -56.49 -1.27 -15.30 15 18 H 0.27 17.24 6.47 -92.70 -0.60 16.64 15 19 H 0.37 15.92 9.04 -74.06 -0.67 15.25 15 20 H 0.05 2.00 7.77 -2.39 -0.02 1.98 15 21 H 0.08 2.39 8.14 -2.39 -0.02 2.37 15 22 H 0.08 1.78 8.14 -2.39 -0.02 1.76 15 23 H 0.10 1.79 8.14 -2.38 -0.02 1.77 15 24 H 0.12 2.53 8.14 -2.39 -0.02 2.51 15 25 H 0.10 2.22 8.14 -2.38 -0.02 2.20 15 Total: -1.00 -68.00 224.64 1.75 -66.25 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.67 Total: 17.37 kcal Atomic # 6 Polarization: -35.18 SS G_CDS: 1.73 Total: -33.45 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.29 Total: -57.52 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -1.72 Total: -30.73 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.05 Total: 53.38 kcal Atomic # 16 Polarization: -14.03 SS G_CDS: -1.27 Total: -15.30 kcal Total: -68.00 1.75 -66.25 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535764685.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.996 kcal (2) G-P(sol) polarization free energy of solvation -68.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds