Wall clock time and date at job start Mon Mar 30 2020 02:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86799 * 120.00386 * 2 1 4 4 H 1.48497 * 109.47200 * 240.00543 * 3 2 1 5 5 H 1.48506 * 109.46866 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47374 * 120.00105 * 3 2 1 7 7 C 1.39941 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00347 * 162.20454 * 7 2 1 9 9 C 1.41084 * 119.99663 * 342.47820 * 7 2 1 10 10 C 1.41172 * 120.02885 * 154.80667 * 9 7 2 11 11 C 1.35872 * 120.31839 * 179.97438 * 10 9 7 12 12 C 1.40274 * 120.16752 * 0.02562 * 11 10 9 13 13 N 1.35600 * 133.49468 * 180.02562 * 12 11 10 14 14 C 1.30149 * 108.92681 * 180.02562 * 13 12 11 15 15 O 1.34179 * 110.34442 * 359.97438 * 14 13 12 16 16 C 1.35222 * 108.07840 * 0.02562 * 15 14 13 17 17 C 1.37867 * 133.82098 * 180.33462 * 16 15 14 18 18 H 0.97001 * 119.99748 * 359.97438 * 1 2 3 19 19 H 1.08001 * 119.83849 * 359.97234 * 10 9 7 20 20 H 1.07998 * 119.91691 * 180.02562 * 11 10 9 21 21 H 1.07995 * 124.82797 * 180.02562 * 14 13 12 22 22 H 1.08003 * 120.23172 * 359.92045 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.0962 1.6963 -1.2125 5 1 1.2776 2.7464 -0.0006 6 1 3.0964 1.6963 1.2125 7 6 2.0082 -1.2119 -0.0005 8 1 3.0494 -1.2342 -0.2864 9 6 1.3518 -2.4055 0.3668 10 6 1.8231 -3.6471 -0.1122 11 6 1.1957 -4.8003 0.2383 12 6 0.0736 -4.7648 1.0792 13 7 -0.7407 -5.7214 1.5898 14 6 -1.6507 -5.1523 2.3259 15 8 -1.4795 -3.8214 2.3334 16 6 -0.4069 -3.5320 1.5625 17 6 0.2297 -2.3598 1.2140 18 1 -0.4850 0.8401 0.0004 19 1 2.6863 -3.6805 -0.7603 20 1 1.5620 -5.7465 -0.1315 21 1 -2.4320 -5.6766 2.8560 22 1 -0.1324 -1.4129 1.5863 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033420393.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:47 Heat of formation + Delta-G solvation = 2.164048 kcal Electronic energy + Delta-G solvation = -10854.009867 eV Core-core repulsion = 8760.167131 eV Total energy + Delta-G solvation = -2093.842736 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.053 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.57586 -38.65398 -35.84981 -34.74428 -31.06714 -31.03999 -27.20736 -24.21624 -23.10345 -22.25656 -19.61742 -18.14639 -18.04284 -17.18082 -16.76886 -15.96422 -14.92188 -14.52566 -14.42256 -13.69488 -13.30986 -12.87971 -12.83162 -12.51252 -12.10034 -11.96170 -11.82290 -11.16884 -10.96181 -9.47665 -9.15944 -8.77959 -6.46433 0.31502 0.85575 1.38981 1.44524 1.53872 1.91766 2.15845 2.19971 2.64967 3.49901 3.52365 4.08769 4.58863 4.69228 4.78569 4.90152 5.11509 5.33799 5.56190 5.63716 5.73209 5.97566 6.04619 6.39287 6.67971 6.73495 7.08361 8.17794 Molecular weight = 189.05amu Principal moments of inertia in cm(-1) A = 0.068783 B = 0.011675 C = 0.010251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.982447 B = 2397.735222 C = 2730.855427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.032 3.968 3 Si 0.992 3.008 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.467 4.467 8 H 0.101 0.899 9 C 0.103 3.897 10 C -0.196 4.196 11 C -0.046 4.046 12 C -0.127 4.127 13 N -0.495 5.495 14 C 0.163 3.837 15 O -0.250 6.250 16 C 0.028 3.972 17 C -0.213 4.213 18 H 0.294 0.706 19 H 0.135 0.865 20 H 0.132 0.868 21 H 0.295 0.705 22 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.607 -0.399 1.530 1.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.186 4.186 3 Si 0.812 3.188 4 H -0.175 1.175 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.495 4.495 8 H 0.119 0.881 9 C 0.100 3.900 10 C -0.215 4.215 11 C -0.065 4.065 12 C -0.238 4.238 13 N -0.223 5.223 14 C -0.067 4.067 15 O -0.143 6.143 16 C -0.022 4.022 17 C -0.234 4.234 18 H 0.105 0.895 19 H 0.153 0.847 20 H 0.150 0.850 21 H 0.310 0.690 22 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.470 -0.897 1.379 1.711 hybrid contribution -0.200 1.254 0.171 1.281 sum 0.270 0.357 1.550 1.613 Atomic orbital electron populations 1.69905 1.09600 1.31507 1.32354 1.27022 0.95460 1.05329 0.90814 0.85088 0.78655 0.74533 0.80563 1.17469 1.19428 1.18167 1.19981 0.99043 0.91496 1.38932 0.88127 1.17737 0.90295 0.93870 0.88127 1.21098 1.03741 0.91669 1.05030 1.19878 0.92474 0.98749 0.95436 1.19717 1.03996 0.88489 1.11627 1.70069 1.05949 1.33808 1.12492 1.28816 1.00789 0.77154 0.99902 1.84393 1.42449 1.28387 1.59096 1.20598 0.88522 0.97850 0.95189 1.19857 1.02898 0.93205 1.07482 0.89488 0.84683 0.85018 0.69023 0.87478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.24 10.98 21.83 0.24 -41.00 14 2 C 0.03 1.50 5.13 85.25 0.44 1.94 14 3 Si 0.99 35.36 29.59 68.60 2.03 37.39 14 4 H -0.25 -8.44 7.11 99.48 0.71 -7.73 14 5 H -0.27 -9.24 7.11 99.48 0.71 -8.54 14 6 H -0.26 -8.99 7.11 99.48 0.71 -8.29 14 7 C -0.47 -23.48 9.03 23.38 0.21 -23.27 14 8 H 0.10 4.61 7.91 -2.91 -0.02 4.59 14 9 C 0.10 5.45 5.57 -21.26 -0.12 5.33 14 10 C -0.20 -9.23 9.70 22.44 0.22 -9.01 14 11 C -0.05 -2.15 10.02 22.22 0.22 -1.93 14 12 C -0.13 -6.36 7.25 39.70 0.29 -6.07 14 13 N -0.49 -22.04 11.32 -307.55 -3.48 -25.52 14 14 C 0.16 6.12 13.13 130.49 1.71 7.83 14 15 O -0.25 -11.57 10.78 -10.60 -0.11 -11.68 14 16 C 0.03 1.46 7.41 22.83 0.17 1.63 14 17 C -0.21 -11.82 8.69 22.78 0.20 -11.62 14 18 H 0.29 13.48 8.30 -92.71 -0.77 12.72 14 19 H 0.14 5.51 8.06 -2.91 -0.02 5.49 14 20 H 0.13 5.22 8.06 -2.91 -0.02 5.19 14 21 H 0.29 6.43 8.06 -2.91 -0.02 6.40 14 22 H 0.11 6.17 6.20 -2.91 -0.02 6.16 14 Total: -1.00 -63.25 206.49 3.25 -59.99 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 1.24 Total: 15.99 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 3.34 Total: -35.18 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: -3.24 Total: -66.52 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -0.11 Total: -11.68 kcal Atomic # 14 Polarization: 35.36 SS G_CDS: 2.03 Total: 37.39 kcal Total: -63.25 3.25 -59.99 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033420393.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.159 kcal (2) G-P(sol) polarization free energy of solvation -63.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds