Wall clock time and date at job start Mon Mar 30 2020 02:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86799 * 119.99703 * 2 1 4 4 H 1.48496 * 109.47274 * 269.99872 * 3 2 1 5 5 H 1.48497 * 109.47304 * 30.00065 * 3 2 1 6 6 H 1.48506 * 109.47084 * 150.00387 * 3 2 1 7 7 C 1.40357 * 120.00228 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00237 * 179.97438 * 7 2 1 9 9 C 1.39757 * 120.00101 * 0.02562 * 7 2 1 10 10 C 1.39108 * 125.53658 * 180.02562 * 9 7 2 11 11 C 1.40900 * 106.56497 * 180.02562 * 10 9 7 12 12 C 1.40372 * 134.74823 * 180.02562 * 11 10 9 13 13 C 1.36664 * 118.67172 * 179.97438 * 12 11 10 14 14 N 1.32215 * 121.27247 * 359.72247 * 13 12 11 15 15 C 1.31836 * 122.65220 * 0.58428 * 14 13 12 16 16 C 1.38676 * 120.43682 * 359.41643 * 15 14 13 17 17 O 1.34842 * 133.73334 * 180.29839 * 16 15 14 18 18 H 0.96992 * 120.00273 * 0.02562 * 1 2 3 19 19 H 1.08001 * 126.71919 * 359.97438 * 10 9 7 20 20 H 1.08000 * 120.66473 * 0.02562 * 12 11 10 21 21 H 1.08007 * 119.36754 * 180.02562 * 13 12 11 22 22 H 1.08002 * 119.78421 * 179.70353 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4878 2.0465 -1.4000 5 1 1.4378 2.6527 0.7000 6 1 3.5380 1.4402 0.7000 7 6 2.0082 -1.2155 -0.0005 8 1 3.0883 -1.2155 -0.0010 9 6 1.3095 -2.4259 -0.0016 10 6 1.8857 -3.6920 -0.0017 11 6 0.8228 -4.6170 -0.0036 12 6 0.7318 -6.0178 -0.0041 13 6 -0.5072 -6.5944 -0.0056 14 7 -1.6063 -5.8594 -0.0010 15 6 -1.5806 -4.5413 -0.0061 16 6 -0.3714 -3.8623 -0.0046 17 8 -0.0358 -2.5563 -0.0035 18 1 -0.4850 0.8400 -0.0004 19 1 2.9411 -3.9212 -0.0014 20 1 1.6231 -6.6276 -0.0026 21 1 -0.5903 -7.6712 -0.0056 22 1 -2.5073 -3.9866 -0.0069 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034411979.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:18 Heat of formation + Delta-G solvation = -5.266057 kcal Electronic energy + Delta-G solvation = -10820.859556 eV Core-core repulsion = 8726.694627 eV Total energy + Delta-G solvation = -2094.164929 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.053 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.78897 -39.43524 -35.87388 -33.82526 -31.50497 -31.23340 -27.89752 -24.14885 -23.40952 -21.94241 -19.99383 -18.28409 -17.32799 -17.06386 -16.60331 -16.15532 -15.17612 -14.88964 -14.04824 -14.03784 -13.42807 -13.20382 -13.05372 -12.69198 -12.27027 -11.93654 -11.51123 -11.17404 -10.44078 -9.70236 -9.22472 -9.00537 -6.78313 0.18497 0.65862 1.30427 1.36491 1.56030 1.88732 2.09302 2.47439 2.96774 3.14443 3.69494 3.99066 4.27690 4.52513 4.63556 4.84631 4.94180 5.02517 5.17143 5.52474 5.63880 5.77076 5.97245 6.31485 6.36823 6.85652 7.25375 7.99552 Molecular weight = 189.05amu Principal moments of inertia in cm(-1) A = 0.092495 B = 0.010624 C = 0.009562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 302.646620 B = 2634.885115 C = 2927.689970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.020 3.980 3 Si 1.015 2.985 4 H -0.254 1.254 5 H -0.262 1.262 6 H -0.245 1.245 7 C -0.439 4.439 8 H 0.130 0.870 9 C 0.212 3.788 10 C -0.444 4.444 11 C -0.043 4.043 12 C -0.206 4.206 13 C 0.076 3.924 14 N -0.527 5.527 15 C 0.125 3.875 16 C -0.114 4.114 17 O -0.189 6.189 18 H 0.305 0.695 19 H 0.136 0.864 20 H 0.144 0.856 21 H 0.185 0.815 22 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.186 0.317 -0.010 2.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.202 4.202 3 Si 0.832 3.168 4 H -0.178 1.178 5 H -0.186 1.186 6 H -0.168 1.168 7 C -0.466 4.466 8 H 0.148 0.852 9 C 0.160 3.840 10 C -0.466 4.466 11 C -0.049 4.049 12 C -0.226 4.226 13 C -0.074 4.074 14 N -0.240 5.240 15 C -0.034 4.034 16 C -0.164 4.164 17 O -0.089 6.089 18 H 0.116 0.884 19 H 0.154 0.846 20 H 0.161 0.839 21 H 0.202 0.798 22 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.951 0.144 0.001 0.962 hybrid contribution 1.104 0.875 -0.012 1.409 sum 2.055 1.019 -0.011 2.294 Atomic orbital electron populations 1.69748 1.09836 1.32802 1.28715 1.27513 0.95916 1.06280 0.90487 0.84694 0.78874 0.72969 0.80264 1.17819 1.18590 1.16788 1.19693 0.96220 0.87782 1.42898 0.85233 1.20302 0.78798 0.95633 0.89232 1.21157 0.97982 0.90520 1.36921 1.19363 0.93636 0.95311 0.96598 1.21353 1.00084 0.91778 1.09426 1.22470 0.87142 1.00839 0.96965 1.67687 1.32302 1.04598 1.19384 1.21696 0.93773 0.89726 0.98158 1.21443 0.97921 0.83961 1.13059 1.84532 1.24214 1.22716 1.77487 0.88392 0.84573 0.83870 0.79829 0.82048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.36 11.96 21.90 0.26 -39.10 14 2 C 0.02 0.91 5.50 85.39 0.47 1.38 14 3 Si 1.02 33.31 29.56 68.60 2.03 35.34 14 4 H -0.25 -7.98 7.11 99.48 0.71 -7.27 14 5 H -0.26 -8.15 7.11 99.48 0.71 -7.44 14 6 H -0.24 -7.58 7.11 99.48 0.71 -6.88 14 7 C -0.44 -22.23 9.31 23.15 0.22 -22.01 14 8 H 0.13 5.89 7.85 -2.91 -0.02 5.86 14 9 C 0.21 11.83 6.75 22.85 0.15 11.99 14 10 C -0.44 -23.44 10.94 23.13 0.25 -23.19 14 11 C -0.04 -2.17 6.24 -21.36 -0.13 -2.31 14 12 C -0.21 -8.64 10.15 22.42 0.23 -8.41 14 13 C 0.08 2.92 11.11 84.27 0.94 3.86 14 14 N -0.53 -22.53 10.31 -196.45 -2.03 -24.55 14 15 C 0.13 5.78 11.23 84.80 0.95 6.73 14 16 C -0.11 -6.06 7.43 23.12 0.17 -5.89 14 17 O -0.19 -10.91 8.89 -16.50 -0.15 -11.06 14 18 H 0.30 13.31 8.29 -92.71 -0.77 12.54 14 19 H 0.14 6.57 8.06 -2.91 -0.02 6.55 14 20 H 0.14 5.04 8.06 -2.91 -0.02 5.02 14 21 H 0.18 5.25 8.06 -2.91 -0.02 5.23 14 22 H 0.16 6.59 8.06 -2.91 -0.02 6.56 14 Total: -1.00 -61.64 209.08 4.60 -57.04 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 1.24 Total: 20.18 kcal Atomic # 6 Polarization: -41.10 SS G_CDS: 3.25 Total: -37.85 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -1.76 Total: -63.65 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.15 Total: -11.06 kcal Atomic # 14 Polarization: 33.31 SS G_CDS: 2.03 Total: 35.34 kcal Total: -61.64 4.60 -57.04 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034411979.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.776 kcal (2) G-P(sol) polarization free energy of solvation -61.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds