Wall clock time and date at job start Mon Mar 30 2020 02:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86801 * 120.00028 * 2 1 4 4 H 1.48503 * 109.47158 * 239.72532 * 3 2 1 5 5 H 1.48499 * 109.46918 * 359.72141 * 3 2 1 6 6 H 1.48495 * 109.47231 * 119.72636 * 3 2 1 7 7 C 1.40298 * 120.00096 * 179.72079 * 2 1 3 8 8 H 1.07998 * 119.99910 * 355.48594 * 7 2 1 9 9 C 1.39683 * 120.00128 * 175.47726 * 7 2 1 10 10 C 1.39053 * 125.53903 * 185.88165 * 9 7 2 11 11 C 1.41064 * 106.51134 * 179.85230 * 10 9 7 12 12 C 1.40355 * 133.88264 * 180.12096 * 11 10 9 13 13 C 1.37118 * 118.12994 * 180.31025 * 12 11 10 14 14 C 1.38685 * 119.52101 * 0.02562 * 13 12 11 15 15 N 1.31808 * 121.67611 * 359.97438 * 14 13 12 16 16 C 1.32411 * 121.68055 * 0.02562 * 15 14 13 17 17 O 1.34958 * 132.59377 * 180.02562 * 16 15 14 18 18 H 0.96999 * 120.00287 * 185.08704 * 1 2 3 19 19 H 1.07994 * 126.74123 * 0.02562 * 10 9 7 20 20 H 1.08001 * 120.93976 * 0.32864 * 12 11 10 21 21 H 1.07996 * 120.23915 * 179.97438 * 13 12 11 22 22 H 1.08001 * 119.15623 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.0998 1.6935 -1.2091 5 1 1.2759 2.7464 -0.0068 6 1 3.0897 1.6993 1.2158 7 6 2.0085 -1.2150 0.0059 8 1 1.4710 -2.1485 0.0841 9 6 3.4020 -1.2173 -0.0895 10 6 4.2020 -2.3483 -0.2104 11 6 5.5348 -1.8912 -0.2782 12 6 6.7776 -2.5312 -0.4044 13 6 7.9058 -1.7525 -0.4321 14 6 7.7874 -0.3741 -0.3353 15 7 6.6133 0.2131 -0.2172 16 6 5.4876 -0.4833 -0.1844 17 8 4.1923 -0.1211 -0.0728 18 1 -0.4850 -0.8367 0.0745 19 1 3.8682 -3.3747 -0.2480 20 1 6.8434 -3.6067 -0.4779 21 1 8.8797 -2.2093 -0.5277 22 1 8.6799 0.2336 -0.3582 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034411980.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:56 Heat of formation + Delta-G solvation = -5.953659 kcal Electronic energy + Delta-G solvation = -10927.542866 eV Core-core repulsion = 8833.348120 eV Total energy + Delta-G solvation = -2094.194746 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.053 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.09868 -39.54052 -36.05449 -34.20131 -32.09537 -31.39620 -27.45905 -24.24970 -23.30929 -21.96712 -20.87767 -18.92946 -17.46399 -17.18237 -16.83700 -16.03509 -15.31987 -14.70464 -14.28440 -14.01026 -13.75339 -13.66338 -12.97031 -12.86512 -12.15472 -11.83604 -11.61326 -11.31752 -10.21376 -9.82314 -9.69680 -9.47984 -6.84376 0.15534 0.45833 1.13193 1.21145 1.48680 1.76650 1.97180 2.26935 2.80230 3.04875 3.77215 4.09185 4.19113 4.31950 4.54331 4.83697 5.05596 5.07236 5.14128 5.36623 5.48479 5.58393 5.88028 6.08122 6.17632 6.51479 7.12890 7.66602 Molecular weight = 189.05amu Principal moments of inertia in cm(-1) A = 0.066746 B = 0.013803 C = 0.011490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.398861 B = 2027.998953 C = 2436.281593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.022 3.978 3 Si 1.096 2.904 4 H -0.275 1.275 5 H -0.252 1.252 6 H -0.272 1.272 7 C -0.486 4.486 8 H 0.105 0.895 9 C 0.195 3.805 10 C -0.416 4.416 11 C -0.104 4.104 12 C -0.105 4.105 13 C -0.152 4.152 14 C 0.061 3.939 15 N -0.491 5.491 16 C 0.133 3.867 17 O -0.228 6.228 18 H 0.295 0.705 19 H 0.138 0.862 20 H 0.151 0.849 21 H 0.180 0.820 22 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.595 -1.555 -0.512 9.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.199 4.199 3 Si 0.919 3.081 4 H -0.202 1.202 5 H -0.177 1.177 6 H -0.198 1.198 7 C -0.514 4.514 8 H 0.123 0.877 9 C 0.146 3.854 10 C -0.436 4.436 11 C -0.107 4.107 12 C -0.131 4.131 13 C -0.171 4.171 14 C -0.100 4.100 15 N -0.209 5.209 16 C -0.041 4.041 17 O -0.130 6.130 18 H 0.106 0.894 19 H 0.156 0.844 20 H 0.168 0.832 21 H 0.197 0.803 22 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 9.032 1.184 -0.484 9.122 hybrid contribution -0.388 -2.940 0.041 2.966 sum 8.644 -1.757 -0.443 8.832 Atomic orbital electron populations 1.70539 1.07704 1.33740 1.29488 1.28122 0.96125 1.06211 0.89448 0.83028 0.73675 0.71710 0.79640 1.20207 1.17679 1.19813 1.20171 0.87765 0.97801 1.45618 0.87690 1.19981 0.90989 0.82693 0.91740 1.21042 0.90719 0.97929 1.33936 1.19740 0.96131 0.94056 1.00765 1.21049 0.89593 1.01182 1.01269 1.21992 1.00098 0.94410 1.00649 1.23011 0.92428 0.94003 1.00551 1.66098 0.96597 1.42563 1.15620 1.20026 0.84426 0.90144 1.09524 1.83857 1.14917 1.35115 1.79115 0.89354 0.84369 0.83171 0.80268 0.78705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.37 13.65 21.89 0.30 -40.07 14 2 C 0.02 1.16 5.52 85.36 0.47 1.63 14 3 Si 1.10 50.99 25.78 68.60 1.77 52.76 14 4 H -0.28 -13.32 6.97 99.48 0.69 -12.63 14 5 H -0.25 -10.52 7.11 99.48 0.71 -9.81 14 6 H -0.27 -12.93 7.09 99.48 0.71 -12.23 14 7 C -0.49 -26.05 9.74 23.12 0.23 -25.83 14 8 H 0.11 5.55 8.06 -2.91 -0.02 5.53 14 9 C 0.20 10.59 6.50 22.81 0.15 10.74 14 10 C -0.42 -20.92 10.95 23.16 0.25 -20.66 14 11 C -0.10 -4.87 6.19 -21.35 -0.13 -5.00 14 12 C -0.11 -3.76 10.20 22.52 0.23 -3.53 14 13 C -0.15 -4.43 10.05 22.11 0.22 -4.20 14 14 C 0.06 2.02 11.15 84.80 0.95 2.97 14 15 N -0.49 -22.12 10.38 -307.44 -3.19 -25.31 14 16 C 0.13 6.76 8.54 85.33 0.73 7.49 14 17 O -0.23 -12.49 6.00 -17.58 -0.11 -12.60 14 18 H 0.29 14.29 8.72 -92.71 -0.81 13.48 14 19 H 0.14 6.42 8.06 -2.91 -0.02 6.39 14 20 H 0.15 4.36 8.06 -2.91 -0.02 4.34 14 21 H 0.18 3.25 8.06 -2.91 -0.02 3.23 14 22 H 0.20 4.50 8.06 -2.91 -0.02 4.47 14 Total: -1.00 -61.88 204.83 3.04 -58.84 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: 1.18 Total: 2.78 kcal Atomic # 6 Polarization: -39.49 SS G_CDS: 3.09 Total: -36.40 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: -2.89 Total: -65.38 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -0.11 Total: -12.60 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 1.77 Total: 52.76 kcal Total: -61.88 3.04 -58.84 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034411980.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.883 kcal (2) G-P(sol) polarization free energy of solvation -61.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds