Wall clock time and date at job start Mon Mar 30 2020 02:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31005 * 1 3 3 Si 1.86796 * 119.99865 * 2 1 4 4 H 1.48505 * 109.46927 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47244 * 299.99985 * 3 2 1 6 6 H 1.48502 * 109.47385 * 60.00034 * 3 2 1 7 7 C 1.39800 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99725 * 179.97438 * 7 2 1 9 9 C 1.41014 * 119.99764 * 0.02562 * 7 2 1 10 10 C 1.38632 * 127.27419 * 359.97239 * 9 7 2 11 11 O 1.33925 * 109.32880 * 180.02562 * 10 9 7 12 12 C 1.34844 * 111.49097 * 359.97438 * 11 10 9 13 13 C 1.39168 * 132.98313 * 180.30334 * 12 11 10 14 14 C 1.38415 * 118.36523 * 180.18617 * 13 12 11 15 15 C 1.38544 * 119.64990 * 359.49918 * 14 13 12 16 16 N 1.31692 * 121.04327 * 0.23997 * 15 14 13 17 17 C 1.32469 * 121.41937 * 0.02562 * 16 15 14 18 18 H 0.97005 * 119.99730 * 359.97438 * 1 2 3 19 19 H 1.07995 * 125.33564 * 0.02562 * 10 9 7 20 20 H 1.07998 * 120.81762 * 359.95868 * 13 12 11 21 21 H 1.08002 * 120.17785 * 179.78606 * 14 13 12 22 22 H 1.08000 * 119.47912 * 180.25301 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2440 1.6177 0.0000 4 1 3.7040 1.3463 0.0006 5 1 1.8853 2.3964 -1.2124 6 1 1.8853 2.3965 1.2125 7 6 2.0090 -1.2107 0.0005 8 1 3.0890 -1.2107 0.0001 9 6 1.3039 -2.4319 0.0005 10 6 -0.0713 -2.6073 0.0006 11 8 -0.3511 -3.9170 0.0011 12 6 0.7727 -4.6623 0.0009 13 6 1.0008 -6.0351 -0.0041 14 6 2.3101 -6.4842 0.0013 15 6 3.3490 -5.5677 0.0010 16 7 3.1119 -4.2723 0.0003 17 6 1.8756 -3.7966 0.0004 18 1 -0.4850 0.8401 0.0004 19 1 -0.8024 -1.8125 0.0002 20 1 0.1766 -6.7329 -0.0084 21 1 2.5207 -7.5435 0.0011 22 1 4.3696 -5.9211 0.0010 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038415895.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:51 Heat of formation + Delta-G solvation = 3.713044 kcal Electronic energy + Delta-G solvation = -10842.398850 eV Core-core repulsion = 8748.623284 eV Total energy + Delta-G solvation = -2093.775566 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.053 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.73174 -39.39300 -36.04230 -33.47972 -32.04161 -30.23388 -27.49977 -24.66466 -23.47686 -21.97596 -19.23710 -18.33192 -17.49727 -16.87398 -16.69065 -16.28927 -14.96919 -14.46207 -14.20335 -14.01160 -13.61900 -13.44953 -13.04753 -12.87776 -12.09091 -11.79229 -11.65379 -10.86048 -10.12474 -9.71581 -9.11919 -8.66364 -6.38523 0.16912 0.45890 1.30348 1.38110 1.54770 1.94274 2.19915 2.43687 2.88040 3.36641 3.53313 3.96018 4.11802 4.32839 4.57299 4.81197 5.02269 5.18066 5.28042 5.40443 5.77436 5.92628 6.29968 6.50761 6.84170 6.98342 7.25605 8.36301 Molecular weight = 189.05amu Principal moments of inertia in cm(-1) A = 0.064416 B = 0.012059 C = 0.010194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.572638 B = 2321.328395 C = 2746.059007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.014 3.986 3 Si 1.003 2.997 4 H -0.265 1.265 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.444 4.444 8 H 0.069 0.931 9 C -0.024 4.024 10 C -0.178 4.178 11 O -0.212 6.212 12 C -0.031 4.031 13 C -0.083 4.083 14 C -0.143 4.143 15 C 0.059 3.941 16 N -0.483 5.483 17 C 0.018 3.982 18 H 0.292 0.708 19 H 0.225 0.775 20 H 0.166 0.834 21 H 0.193 0.807 22 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.387 -6.666 -0.007 7.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.195 4.195 3 Si 0.823 3.177 4 H -0.189 1.189 5 H -0.186 1.186 6 H -0.186 1.186 7 C -0.475 4.475 8 H 0.087 0.913 9 C -0.027 4.027 10 C -0.245 4.245 11 O -0.113 6.113 12 C -0.082 4.082 13 C -0.110 4.110 14 C -0.162 4.162 15 C -0.106 4.106 16 N -0.193 5.193 17 C -0.112 4.112 18 H 0.103 0.897 19 H 0.240 0.760 20 H 0.184 0.816 21 H 0.210 0.790 22 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 2.607 -5.961 -0.008 6.506 hybrid contribution -0.436 0.409 0.001 0.598 sum 2.171 -5.551 -0.007 5.961 Atomic orbital electron populations 1.69297 1.08611 1.30383 1.39231 1.26750 0.95901 1.04426 0.92467 0.84823 0.78536 0.75164 0.79136 1.18890 1.18577 1.18586 1.19075 0.94292 0.89858 1.44271 0.91294 1.19138 0.92106 0.90362 1.01108 1.25480 0.97410 0.79607 1.21985 1.83622 1.31420 1.18904 1.77373 1.21089 0.86515 0.95254 1.05325 1.20869 0.99797 0.88912 1.01403 1.22306 0.90570 1.02998 1.00322 1.23363 1.01777 0.86815 0.98614 1.66808 1.22450 1.18136 1.11896 1.21293 0.89457 0.95456 1.05036 0.89673 0.75961 0.81630 0.78970 0.79222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.93 10.37 21.81 0.23 -44.70 14 2 C 0.01 0.73 5.49 85.19 0.47 1.20 14 3 Si 1.00 40.44 29.56 68.60 2.03 42.47 14 4 H -0.26 -10.70 7.11 99.48 0.71 -10.00 14 5 H -0.26 -9.91 7.11 99.48 0.71 -9.20 14 6 H -0.26 -9.91 7.11 99.48 0.71 -9.21 14 7 C -0.44 -26.17 9.44 23.33 0.22 -25.95 14 8 H 0.07 4.07 7.84 -2.91 -0.02 4.04 14 9 C -0.02 -1.42 6.13 -19.93 -0.12 -1.55 14 10 C -0.18 -10.21 11.07 67.91 0.75 -9.46 14 11 O -0.21 -11.22 10.52 -4.27 -0.04 -11.26 14 12 C -0.03 -1.49 7.38 22.97 0.17 -1.32 14 13 C -0.08 -2.94 10.19 22.54 0.23 -2.71 14 14 C -0.14 -4.13 10.09 22.38 0.23 -3.91 14 15 C 0.06 2.05 11.17 84.79 0.95 2.99 14 16 N -0.48 -23.41 10.40 -184.47 -1.92 -25.33 14 17 C 0.02 0.99 7.51 42.10 0.32 1.30 14 18 H 0.29 13.80 8.30 -92.70 -0.77 13.03 14 19 H 0.22 12.75 5.72 -2.91 -0.02 12.73 14 20 H 0.17 4.47 8.06 -2.91 -0.02 4.44 14 21 H 0.19 3.24 8.06 -2.91 -0.02 3.21 14 22 H 0.19 4.77 8.06 -2.91 -0.02 4.74 14 Total: -1.00 -69.15 206.68 4.74 -64.41 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 1.24 Total: 13.79 kcal Atomic # 6 Polarization: -42.60 SS G_CDS: 3.21 Total: -39.39 kcal Atomic # 7 Polarization: -68.34 SS G_CDS: -1.69 Total: -70.03 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.04 Total: -11.26 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -69.15 4.74 -64.41 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038415895.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.126 kcal (2) G-P(sol) polarization free energy of solvation -69.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds