Wall clock time and date at job start Mon Mar 30 2020 01:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00199 * 2 1 4 4 H 1.48499 * 109.47041 * 270.00256 * 3 2 1 5 5 H 1.48506 * 109.47050 * 30.00088 * 3 2 1 6 6 H 1.48497 * 109.47294 * 149.99813 * 3 2 1 7 7 C 1.37880 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99885 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00010 * 180.02562 * 7 2 1 10 10 H 1.09006 * 109.47984 * 299.97629 * 9 7 2 11 11 C 1.53281 * 109.45633 * 179.97438 * 9 7 2 12 12 C 1.53183 * 109.06203 * 182.45064 * 11 9 7 13 13 H 1.09000 * 109.54491 * 176.85100 * 12 11 9 14 14 O 1.42905 * 109.54060 * 297.02834 * 12 11 9 15 15 C 1.53180 * 109.11115 * 56.93686 * 12 11 9 16 16 C 1.53092 * 109.16382 * 302.97517 * 15 12 11 17 17 H 1.08998 * 109.48046 * 177.59180 * 16 15 12 18 18 O 1.42902 * 109.48060 * 297.61682 * 16 15 12 19 19 O 1.42898 * 109.48034 * 59.99844 * 9 7 2 20 20 H 0.97004 * 120.00222 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.64404 * 62.53313 * 11 9 7 22 22 H 1.09003 * 109.50296 * 302.27604 * 11 9 7 23 23 H 0.96696 * 114.00036 * 179.82348 * 14 12 11 24 24 H 1.08999 * 109.51956 * 62.88115 * 15 12 11 25 25 H 1.08992 * 109.52344 * 183.07181 * 15 12 11 26 26 H 0.96704 * 113.99540 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8754 -0.6808 -0.8891 11 6 4.0221 -2.6394 0.0023 12 6 5.5526 -2.6292 0.0648 13 1 5.9220 -3.6531 0.1224 14 8 6.0746 -1.9979 -1.1061 15 6 5.9986 -1.8528 1.3076 16 6 5.4118 -0.4398 1.2549 17 1 5.6907 0.1035 2.1578 18 8 5.9218 0.2456 0.1095 19 8 3.9876 -0.5202 1.1678 20 1 -0.4851 0.8401 -0.0004 21 1 3.6980 -3.1432 -0.9083 22 1 3.6256 -3.1647 0.8712 23 1 7.0402 -1.9540 -1.1320 24 1 5.6419 -2.3623 2.2028 25 1 7.0868 -1.7946 1.3297 26 1 5.5911 1.1491 0.0123 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039059913.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:40 Heat of formation + Delta-G solvation = -177.127232 kcal Electronic energy + Delta-G solvation = -12625.673302 eV Core-core repulsion = 10282.172904 eV Total energy + Delta-G solvation = -2343.500398 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.088 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.67708 -37.31830 -36.32732 -34.58007 -32.73708 -31.64544 -27.72297 -24.54487 -23.38397 -20.91232 -19.11673 -18.49562 -17.84646 -17.44485 -16.23435 -15.96487 -15.48995 -15.12343 -14.62293 -14.28894 -14.02066 -13.05425 -12.91337 -12.59374 -12.56341 -12.24867 -11.93681 -11.63136 -11.50581 -10.97488 -10.72563 -10.67906 -9.91525 -8.35219 -6.48105 1.39363 1.42061 1.63014 2.42968 2.83857 3.27797 3.50505 3.63407 3.90370 4.14375 4.16198 4.31465 4.60859 4.76131 4.93394 4.99484 5.05071 5.09729 5.40237 5.60736 6.21857 6.38493 6.62527 7.01912 7.09878 7.28906 8.78886 Molecular weight = 188.09amu Principal moments of inertia in cm(-1) A = 0.051117 B = 0.017633 C = 0.015147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.636838 B = 1587.516725 C = 1848.138306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.018 3.982 3 Si 0.956 3.044 4 H -0.282 1.282 5 H -0.297 1.297 6 H -0.206 1.206 7 C -0.535 4.535 8 H 0.038 0.962 9 C 0.203 3.797 10 H 0.018 0.982 11 C -0.131 4.131 12 C 0.109 3.891 13 H 0.076 0.924 14 O -0.566 6.566 15 C -0.163 4.163 16 C 0.238 3.762 17 H 0.100 0.900 18 O -0.575 6.575 19 O -0.417 6.417 20 H 0.268 0.732 21 H 0.057 0.943 22 H 0.071 0.929 23 H 0.384 0.616 24 H 0.098 0.902 25 H 0.103 0.897 26 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.306 -0.814 2.657 15.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.181 4.181 3 Si 0.780 3.220 4 H -0.208 1.208 5 H -0.224 1.224 6 H -0.128 1.128 7 C -0.572 4.572 8 H 0.056 0.944 9 C 0.148 3.852 10 H 0.035 0.965 11 C -0.169 4.169 12 C 0.050 3.950 13 H 0.094 0.906 14 O -0.372 6.372 15 C -0.201 4.201 16 C 0.142 3.858 17 H 0.117 0.883 18 O -0.384 6.384 19 O -0.340 6.340 20 H 0.076 0.924 21 H 0.075 0.925 22 H 0.090 0.910 23 H 0.233 0.767 24 H 0.116 0.884 25 H 0.121 0.879 26 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 14.725 -1.185 2.583 14.997 hybrid contribution -0.121 0.895 0.034 0.904 sum 14.605 -0.290 2.616 14.840 Atomic orbital electron populations 1.70078 1.08570 1.28509 1.50981 1.26100 0.95571 1.04289 0.92179 0.85784 0.81609 0.76412 0.78221 1.20812 1.22359 1.12838 1.21332 0.90644 0.93459 1.51765 0.94403 1.19622 0.91299 0.89644 0.84676 0.96455 1.22053 0.94516 0.98633 1.01688 1.21768 0.93021 0.95319 0.84880 0.90587 1.86601 1.26519 1.82570 1.41557 1.22790 1.02702 0.94624 0.99957 1.23277 0.80368 0.93328 0.88841 0.88277 1.86554 1.70958 1.31363 1.49500 1.88373 1.21538 1.77452 1.46601 0.92383 0.92471 0.91010 0.76734 0.88409 0.87899 0.77269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.71 13.96 21.45 0.30 -60.41 15 2 C 0.02 1.06 5.47 84.66 0.46 1.53 15 3 Si 0.96 46.19 26.99 68.60 1.85 48.04 15 4 H -0.28 -13.33 7.11 99.48 0.71 -12.63 15 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 15 6 H -0.21 -8.88 4.33 99.48 0.43 -8.45 15 7 C -0.53 -32.29 9.38 25.60 0.24 -32.05 15 8 H 0.04 2.49 7.99 -2.91 -0.02 2.47 15 9 C 0.20 10.05 1.67 29.94 0.05 10.10 15 10 H 0.02 0.93 6.66 -2.38 -0.02 0.91 15 11 C -0.13 -5.45 5.10 30.75 0.16 -5.30 15 12 C 0.11 3.41 3.80 30.72 0.12 3.53 15 13 H 0.08 1.92 8.14 -2.39 -0.02 1.90 15 14 O -0.57 -18.47 11.03 -128.91 -1.42 -19.89 15 15 C -0.16 -4.46 5.65 30.69 0.17 -4.29 15 16 C 0.24 8.01 4.36 72.01 0.31 8.32 15 17 H 0.10 2.83 8.14 -2.39 -0.02 2.81 15 18 O -0.58 -19.15 10.87 -118.99 -1.29 -20.44 15 19 O -0.42 -18.81 7.25 -126.22 -0.91 -19.72 15 20 H 0.27 16.06 8.31 -92.71 -0.77 15.29 15 21 H 0.06 2.46 8.14 -2.39 -0.02 2.44 15 22 H 0.07 2.93 8.14 -2.39 -0.02 2.92 15 23 H 0.38 8.80 9.08 -74.06 -0.67 8.13 15 24 H 0.10 2.48 8.14 -2.39 -0.02 2.46 15 25 H 0.10 2.14 8.14 -2.39 -0.02 2.12 15 26 H 0.38 11.37 8.29 -74.05 -0.61 10.75 15 Total: -1.00 -72.66 213.25 -0.33 -72.99 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -0.37 Total: 17.58 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: 1.51 Total: -18.15 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.30 Total: -60.41 kcal Atomic # 8 Polarization: -56.43 SS G_CDS: -3.63 Total: -60.06 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.85 Total: 48.04 kcal Total: -72.66 -0.33 -72.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039059913.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.139 kcal (2) G-P(sol) polarization free energy of solvation -72.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds