Wall clock time and date at job start Mon Mar 30 2020 02:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.40305 * 119.86080 * 274.67303 * 3 2 1 5 5 C 1.36046 * 120.38126 * 179.76273 * 4 3 2 6 6 C 1.40968 * 120.08656 * 0.46884 * 5 4 3 7 7 C 1.40749 * 120.13425 * 179.78637 * 6 5 4 8 8 H 1.08000 * 119.99924 * 205.38804 * 7 6 5 9 9 C 1.40203 * 119.99925 * 25.38144 * 7 6 5 10 10 N 1.30707 * 120.00034 * 17.39839 * 9 7 6 11 11 Si 1.86801 * 120.00127 * 197.39821 * 9 7 6 12 12 H 1.48500 * 109.46916 * 265.19500 * 11 9 7 13 13 H 1.48497 * 109.46798 * 25.19107 * 11 9 7 14 14 H 1.48490 * 109.47454 * 145.19220 * 11 9 7 15 15 C 1.41524 * 119.72955 * 359.50932 * 6 5 4 16 16 O 1.35649 * 120.18911 * 180.27311 * 15 6 5 17 17 C 1.37990 * 119.61824 * 0.25293 * 15 6 5 18 18 H 1.07999 * 119.80879 * 359.97438 * 4 3 2 19 19 H 1.07994 * 119.95408 * 180.23596 * 5 4 3 20 20 H 0.96998 * 119.99575 * 179.97438 * 10 9 7 21 21 H 0.96694 * 114.00231 * 89.99940 * 16 15 6 22 22 H 1.08006 * 120.04818 * 179.97438 * 17 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2666 -0.0982 1.2127 5 6 4.6270 -0.1034 1.2247 6 6 5.3447 0.0006 0.0158 7 6 6.7522 -0.0002 0.0274 8 1 7.2990 0.4715 -0.7757 9 6 7.4442 -0.6131 1.0815 10 7 6.8286 -1.4630 1.8607 11 14 9.2460 -0.2152 1.3723 12 1 10.0926 -1.2279 0.6920 13 1 9.5498 1.1318 0.8259 14 1 9.5279 -0.2331 2.8301 15 6 4.6443 0.1000 -1.2099 16 8 5.3256 0.1949 -2.3791 17 6 3.2644 0.0992 -1.2089 18 1 2.7213 -0.1739 2.1418 19 1 5.1577 -0.1836 2.1618 20 1 7.3075 -1.8873 2.5897 21 1 5.5233 -0.6580 -2.7895 22 1 2.7229 0.1751 -2.1402 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039060163.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:15 Heat of formation + Delta-G solvation = -24.588368 kcal Electronic energy + Delta-G solvation = -10592.954933 eV Core-core repulsion = 8497.952125 eV Total energy + Delta-G solvation = -2095.002808 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.053 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.10339 -37.70269 -36.77891 -35.57625 -31.87064 -30.50602 -27.73212 -23.75963 -22.81651 -19.92200 -19.39605 -17.46486 -17.25027 -16.22344 -15.80589 -15.31924 -14.58752 -14.35313 -14.22983 -13.78572 -13.44575 -13.31729 -12.84462 -12.54009 -12.24143 -12.08061 -11.68541 -11.12392 -10.96535 -9.49073 -9.32927 -8.80595 -6.46247 0.36583 0.98733 1.41720 1.46227 1.58624 1.90995 2.14034 2.20762 2.80918 3.37279 3.55601 4.04883 4.35575 4.55021 5.00141 5.07131 5.25597 5.51088 5.59598 5.86170 5.96830 6.13768 6.44547 6.68294 6.71109 6.84007 7.36761 8.11624 Molecular weight = 189.05amu Principal moments of inertia in cm(-1) A = 0.059442 B = 0.011194 C = 0.009666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.937827 B = 2500.731514 C = 2896.021639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C 0.301 3.699 3 C -0.185 4.185 4 C -0.050 4.050 5 C -0.179 4.179 6 C 0.084 3.916 7 C -0.446 4.446 8 H 0.089 0.911 9 C 0.039 3.961 10 N -0.789 5.789 11 Si 0.986 3.014 12 H -0.260 1.260 13 H -0.259 1.259 14 H -0.263 1.263 15 C -0.039 4.039 16 O -0.499 6.499 17 C -0.050 4.050 18 H 0.117 0.883 19 H 0.119 0.881 20 H 0.300 0.700 21 H 0.380 0.620 22 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.039 -0.235 -0.342 5.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.197 5.197 2 C -0.008 4.008 3 C -0.191 4.191 4 C -0.071 4.071 5 C -0.199 4.199 6 C 0.080 3.920 7 C -0.473 4.473 8 H 0.107 0.893 9 C -0.182 4.182 10 N -0.411 5.411 11 Si 0.806 3.194 12 H -0.184 1.184 13 H -0.183 1.183 14 H -0.187 1.187 15 C -0.084 4.084 16 O -0.308 6.308 17 C -0.072 4.072 18 H 0.135 0.865 19 H 0.137 0.863 20 H 0.111 0.889 21 H 0.234 0.766 22 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.263 0.195 -0.030 3.269 hybrid contribution 1.029 -0.546 0.067 1.167 sum 4.292 -0.351 0.037 4.307 Atomic orbital electron populations 1.81086 1.12951 1.15851 1.09819 1.25989 0.92680 0.90666 0.91507 1.15311 0.82851 1.25978 0.94947 1.20524 0.94155 0.96821 0.95567 1.20813 0.92652 1.08376 0.98045 1.18400 0.94472 0.87802 0.91322 1.19995 0.91935 1.28918 1.06451 0.89295 1.26936 1.05890 0.91951 0.93397 1.69763 1.41046 1.16963 1.13349 0.85109 0.75364 0.80088 0.78868 1.18420 1.18294 1.18741 1.18278 0.88992 1.15752 0.85421 1.84687 1.76616 1.34435 1.35032 1.20916 0.93110 0.96857 0.96279 0.86463 0.86343 0.88881 0.76595 0.85983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -22.09 18.54 19.00 0.35 -21.74 14 2 C 0.30 12.41 15.31 88.33 1.35 13.76 14 3 C -0.18 -7.71 5.76 -21.14 -0.12 -7.84 14 4 C -0.05 -2.11 9.67 22.26 0.22 -1.89 14 5 C -0.18 -8.26 8.61 22.43 0.19 -8.07 14 6 C 0.08 4.02 5.58 -21.19 -0.12 3.90 14 7 C -0.45 -20.92 8.70 23.36 0.20 -20.72 14 8 H 0.09 4.12 7.66 -2.91 -0.02 4.10 14 9 C 0.04 1.67 5.14 85.34 0.44 2.11 14 10 N -0.79 -34.99 10.97 21.87 0.24 -34.75 14 11 Si 0.99 32.64 29.60 68.60 2.03 34.67 14 12 H -0.26 -8.29 7.11 99.48 0.71 -7.58 14 13 H -0.26 -8.67 7.11 99.48 0.71 -7.96 14 14 H -0.26 -8.29 7.11 99.48 0.71 -7.59 14 15 C -0.04 -1.72 6.73 23.02 0.15 -1.57 14 16 O -0.50 -20.05 12.78 -89.64 -1.15 -21.19 14 17 C -0.05 -2.09 9.67 22.60 0.22 -1.87 14 18 H 0.12 4.40 8.06 -2.91 -0.02 4.37 14 19 H 0.12 5.57 6.18 -2.91 -0.02 5.55 14 20 H 0.30 11.81 8.29 -92.71 -0.77 11.04 14 21 H 0.38 11.96 9.06 -74.06 -0.67 11.29 14 22 H 0.12 4.50 8.06 -2.91 -0.02 4.47 14 Total: -1.00 -52.10 215.67 4.61 -47.49 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.59 Total: 17.70 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 2.54 Total: -22.18 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.59 Total: -56.49 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -1.15 Total: -21.19 kcal Atomic # 14 Polarization: 32.64 SS G_CDS: 2.03 Total: 34.67 kcal Total: -52.10 4.61 -47.49 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039060163.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.905 kcal (2) G-P(sol) polarization free energy of solvation -52.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds