Wall clock time and date at job start Mon Mar 30 2020 02:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86800 * 120.00027 * 2 1 4 4 H 1.48498 * 109.47214 * 270.00242 * 3 2 1 5 5 H 1.48495 * 109.47313 * 30.00401 * 3 2 1 6 6 H 1.48507 * 109.47271 * 150.00087 * 3 2 1 7 7 C 1.39870 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99932 * 162.42037 * 7 2 1 9 9 C 1.41140 * 119.99677 * 342.40817 * 7 2 1 10 10 C 1.40899 * 120.32189 * 155.08520 * 9 7 2 11 11 C 1.36034 * 119.99340 * 180.02562 * 10 9 7 12 12 C 1.40405 * 120.60078 * 0.04558 * 11 10 9 13 13 C 1.39322 * 119.36170 * 359.95786 * 12 11 10 14 14 C 1.36398 * 120.75352 * 0.02562 * 13 12 11 15 15 C 1.51277 * 108.41119 * 180.02562 * 13 12 11 16 16 C 1.53741 * 104.42844 * 0.02562 * 15 13 12 17 17 N 1.38830 * 129.04494 * 179.97438 * 12 11 10 18 18 H 0.96995 * 119.99730 * 359.97438 * 1 2 3 19 19 H 1.07994 * 120.00438 * 0.04701 * 10 9 7 20 20 H 1.07995 * 119.70009 * 180.02562 * 11 10 9 21 21 H 1.07999 * 120.03089 * 180.02562 * 14 13 12 22 22 H 1.09001 * 110.44068 * 118.73692 * 15 13 12 23 23 H 1.09003 * 110.44480 * 241.25969 * 15 13 12 24 24 H 1.09003 * 110.28371 * 241.05177 * 16 15 13 25 25 H 1.09000 * 110.28917 * 118.94766 * 16 15 13 26 26 H 0.96999 * 124.84435 * 359.73022 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4905 2.0465 -1.4000 5 1 1.4406 2.6526 0.7001 6 1 3.5407 1.4402 0.7000 7 6 2.0084 -1.2113 -0.0005 8 1 3.0506 -1.2330 -0.2830 9 6 1.3522 -2.4052 0.3684 10 6 1.8202 -3.6485 -0.1011 11 6 1.1823 -4.7950 0.2582 12 6 0.0559 -4.7538 1.0954 13 6 -0.4062 -3.5240 1.5590 14 6 0.2224 -2.3654 1.2082 15 6 -1.6177 -3.7669 2.4318 16 6 -1.8006 -5.2933 2.4171 17 7 -0.7219 -5.8026 1.5672 18 1 -0.4849 0.8400 0.0004 19 1 2.6855 -3.6913 -0.7458 20 1 1.5453 -5.7454 -0.1040 21 1 -0.1454 -1.4185 1.5746 22 1 -1.4321 -3.4158 3.4469 23 1 -2.4945 -3.2739 2.0119 24 1 -2.7702 -5.5536 1.9927 25 1 -1.7090 -5.6946 3.4264 26 1 -0.5740 -6.7388 1.3607 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044368248.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:23 Heat of formation + Delta-G solvation = 22.520048 kcal Electronic energy + Delta-G solvation = -11089.588546 eV Core-core repulsion = 9132.461607 eV Total energy + Delta-G solvation = -1957.126939 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 189.085 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.84585 -35.46156 -32.93454 -30.68123 -28.72334 -27.47229 -24.72786 -21.65179 -20.66426 -19.66787 -16.91825 -16.21804 -14.93629 -14.74533 -14.40065 -13.55436 -12.68909 -12.41022 -11.70927 -11.47140 -11.39221 -11.26299 -11.17777 -10.99477 -10.86584 -10.41134 -9.69397 -9.25989 -9.21154 -8.49181 -7.32986 -6.61840 -6.30058 -4.01220 2.92041 3.08566 3.16297 3.21160 3.35972 4.07223 4.47643 4.74775 5.50767 5.57643 5.73258 5.92801 6.11711 6.34402 6.44454 6.61021 6.82441 7.05743 7.24565 7.36501 7.52491 7.69739 7.94214 8.14677 8.22847 8.44017 8.75754 8.93542 9.07415 9.16643 10.39563 Molecular weight = 189.08amu Principal moments of inertia in cm(-1) A = 0.064843 B = 0.011239 C = 0.009864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.706619 B = 2490.626258 C = 2837.977221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.466 4.466 8 H 0.073 0.927 9 C 0.079 3.921 10 C -0.186 4.186 11 C -0.146 4.146 12 C 0.069 3.931 13 C -0.145 4.145 14 C -0.112 4.112 15 C -0.081 4.081 16 C 0.132 3.868 17 N -0.764 5.764 18 H 0.276 0.724 19 H 0.094 0.906 20 H 0.083 0.917 21 H 0.118 0.882 22 H 0.066 0.934 23 H 0.069 0.931 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.014 -3.863 3.152 5.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.497 4.497 8 H 0.092 0.908 9 C 0.076 3.924 10 C -0.207 4.207 11 C -0.169 4.169 12 C -0.028 4.028 13 C -0.149 4.149 14 C -0.131 4.131 15 C -0.118 4.118 16 C 0.006 3.994 17 N -0.402 5.402 18 H 0.087 0.913 19 H 0.112 0.888 20 H 0.101 0.899 21 H 0.136 0.864 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -2.312 -3.670 3.219 5.401 hybrid contribution 0.343 0.352 -0.186 0.526 sum -1.969 -3.317 3.032 4.907 Atomic orbital electron populations 1.69860 1.07367 1.28603 1.37633 1.25800 0.94658 1.00886 0.92719 0.86412 0.80627 0.81214 0.78963 1.19786 1.20351 1.18702 1.19322 0.97784 0.91213 1.41419 0.90844 1.17380 0.92194 0.92026 0.90818 1.20456 1.02705 0.92568 1.04932 1.19590 0.97188 0.97129 1.02971 1.17949 0.95523 0.87440 1.01896 1.19430 0.98644 0.93432 1.03436 1.20371 0.98018 0.95498 0.99261 1.20908 0.97469 0.94204 0.99215 1.21435 0.90201 0.94402 0.93345 1.43972 1.33082 1.05774 1.57339 0.91333 0.88773 0.89850 0.86410 0.91516 0.91274 0.93707 0.93693 0.77079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.61 10.97 55.54 0.61 -21.00 15 2 C 0.07 1.94 5.14 -17.34 -0.09 1.85 15 3 Si 0.90 19.31 29.59 -169.99 -5.03 14.28 15 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 15 6 H -0.26 -5.58 7.11 56.52 0.40 -5.18 15 7 C -0.47 -12.80 9.04 -37.87 -0.34 -13.14 15 8 H 0.07 1.94 7.90 -52.49 -0.41 1.52 15 9 C 0.08 2.17 5.57 -106.81 -0.59 1.58 15 10 C -0.19 -4.74 9.73 -39.37 -0.38 -5.13 15 11 C -0.15 -3.45 10.01 -39.56 -0.40 -3.85 15 12 C 0.07 1.61 7.04 -83.47 -0.59 1.02 15 13 C -0.15 -3.52 6.17 -104.60 -0.65 -4.16 15 14 C -0.11 -2.99 8.64 -39.27 -0.34 -3.33 15 15 C -0.08 -1.56 6.95 -27.21 -0.19 -1.74 15 16 C 0.13 2.21 7.95 -3.67 -0.03 2.18 15 17 N -0.76 -14.48 6.48 -57.97 -0.38 -14.85 15 18 H 0.28 6.75 8.30 -40.82 -0.34 6.41 15 19 H 0.09 2.24 8.06 -52.49 -0.42 1.81 15 20 H 0.08 1.73 8.06 -52.49 -0.42 1.31 15 21 H 0.12 3.26 6.18 -52.49 -0.32 2.93 15 22 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15 23 H 0.07 1.28 8.14 -51.93 -0.42 0.85 15 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 15 26 H 0.39 6.37 8.96 -40.82 -0.37 6.00 15 LS Contribution 224.64 15.07 3.39 3.39 Total: -1.00 -28.97 224.64 -7.78 -36.76 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -2.78 Total: 6.16 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: -3.60 Total: -24.73 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.23 Total: -35.86 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -28.97 -7.78 -36.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368248.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.279 kcal (2) G-P(sol) polarization free energy of solvation -28.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds