Wall clock time and date at job start Mon Mar 30 2020 02:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30627 * 1 3 3 Si 1.86794 * 120.00259 * 2 1 4 4 H 1.48496 * 109.47405 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47079 * 119.99997 * 3 2 1 6 6 H 1.48502 * 109.47165 * 239.99390 * 3 2 1 7 7 C 1.40249 * 119.99699 * 180.27184 * 2 1 3 8 8 H 1.07997 * 119.99865 * 3.14811 * 7 2 1 9 9 C 1.40570 * 120.00123 * 183.14051 * 7 2 1 10 10 N 1.34525 * 121.29388 * 6.74412 * 9 7 2 11 11 C 1.31316 * 120.82654 * 179.97438 * 10 9 7 12 12 N 1.31917 * 123.69128 * 359.97438 * 11 10 9 13 13 C 1.32539 * 121.64583 * 0.02562 * 12 11 10 14 14 N 1.37157 * 134.58936 * 179.97438 * 13 12 11 15 15 H 0.97000 * 125.51180 * 0.02562 * 14 13 12 16 16 C 1.36777 * 108.97015 * 180.02562 * 14 13 12 17 17 C 1.35164 * 109.55744 * 359.97438 * 16 14 13 18 18 C 1.40573 * 107.70168 * 359.74107 * 17 16 14 19 19 H 0.97003 * 120.00308 * 174.86910 * 1 2 3 20 20 H 1.07995 * 118.15674 * 179.97438 * 11 10 9 21 21 H 1.08000 * 125.21799 * 179.97438 * 16 14 13 22 22 H 1.08003 * 126.14844 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6176 0.0000 4 1 1.2754 2.7464 0.0006 5 1 3.0941 1.6963 1.2125 6 1 3.0942 1.6962 -1.2124 7 6 2.0074 -1.2146 -0.0058 8 1 1.4686 -2.1489 -0.0616 9 6 3.4116 -1.2160 0.0609 10 7 4.1025 -0.0800 0.2655 11 6 5.4141 -0.0919 0.3267 12 7 6.1429 -1.1839 0.1974 13 6 5.5880 -2.3699 -0.0082 14 7 6.0707 -3.6425 -0.1770 15 1 7.0071 -3.8955 -0.1699 16 6 5.0181 -4.4971 -0.3571 17 6 3.8589 -3.8038 -0.3079 18 6 4.1777 -2.4534 -0.0820 19 1 -0.4851 -0.8367 -0.0751 20 1 5.9251 0.8450 0.4922 21 1 5.1006 -5.5624 -0.5144 22 1 2.8659 -4.2142 -0.4174 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044371009.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:11 Heat of formation + Delta-G solvation = 55.308067 kcal Electronic energy + Delta-G solvation = -10986.942366 eV Core-core repulsion = 8927.696879 eV Total energy + Delta-G solvation = -2059.245487 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.44073 -37.26054 -34.28664 -32.00744 -30.06442 -28.61941 -25.96370 -22.14548 -21.82149 -19.79547 -18.64307 -17.57192 -15.80328 -14.81574 -14.49986 -14.12543 -13.18657 -12.62346 -12.50183 -12.19944 -12.06972 -11.93017 -10.89880 -10.47691 -9.92717 -9.60682 -9.18296 -8.88266 -8.03320 -7.75466 -7.26815 -7.22415 -5.04907 2.15975 2.79587 3.54815 3.57275 3.68961 3.75017 3.96586 4.39001 4.61623 5.48826 5.52793 5.62803 5.87333 6.00355 6.23198 6.70207 6.80649 7.17348 7.18737 7.41729 7.67521 7.84599 8.11729 8.19060 8.41778 8.77512 9.69439 9.80762 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.053120 B = 0.015860 C = 0.012307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.985849 B = 1764.994388 C = 2274.521922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.043 3.957 3 Si 1.153 2.847 4 H -0.329 1.329 5 H -0.271 1.271 6 H -0.289 1.289 7 C -0.423 4.423 8 H 0.089 0.911 9 C 0.294 3.706 10 N -0.637 5.637 11 C 0.356 3.644 12 N -0.643 5.643 13 C 0.310 3.690 14 N -0.569 5.569 15 H 0.406 0.594 16 C -0.043 4.043 17 C -0.139 4.139 18 C -0.273 4.273 19 H 0.288 0.712 20 H 0.167 0.833 21 H 0.159 0.841 22 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.034 -3.805 -0.555 6.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.182 4.182 3 Si 0.986 3.014 4 H -0.263 1.263 5 H -0.198 1.198 6 H -0.216 1.216 7 C -0.456 4.456 8 H 0.107 0.893 9 C 0.168 3.832 10 N -0.369 5.369 11 C 0.064 3.936 12 N -0.376 5.376 13 C 0.077 3.923 14 N -0.175 5.175 15 H 0.242 0.758 16 C -0.167 4.167 17 C -0.165 4.165 18 C -0.283 4.283 19 H 0.099 0.901 20 H 0.184 0.816 21 H 0.176 0.824 22 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.284 -1.650 -0.360 5.547 hybrid contribution 0.130 -3.002 -0.231 3.014 sum 5.414 -4.652 -0.591 7.163 Atomic orbital electron populations 1.70611 1.08299 1.33328 1.27527 1.28130 0.95195 1.06635 0.88236 0.81882 0.70707 0.68717 0.80105 1.26267 1.19808 1.21641 1.20833 0.90490 0.96656 1.37650 0.89320 1.19405 0.93112 0.85034 0.85677 1.67472 1.08910 1.27978 1.32540 1.23623 0.86930 0.94015 0.88984 1.66852 1.41288 0.96693 1.32803 1.18330 0.89597 0.86014 0.98399 1.41305 1.08198 1.04863 1.63152 0.75782 1.21452 0.86173 0.94865 1.14255 1.20259 0.96921 0.92553 1.06778 1.20273 0.94012 0.95369 1.18666 0.90058 0.81614 0.82374 0.85386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.08 13.64 55.56 0.76 -19.32 14 2 C 0.04 1.12 5.52 -17.31 -0.10 1.02 14 3 Si 1.15 27.37 25.63 -169.99 -4.36 23.02 14 4 H -0.33 -7.66 7.11 56.52 0.40 -7.26 14 5 H -0.27 -6.42 6.67 56.52 0.38 -6.04 14 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 14 7 C -0.42 -11.26 9.63 -37.95 -0.37 -11.63 14 8 H 0.09 2.32 8.05 -52.49 -0.42 1.90 14 9 C 0.29 7.87 6.55 -82.59 -0.54 7.32 14 10 N -0.64 -16.46 4.85 -11.28 -0.05 -16.51 14 11 C 0.36 8.38 12.17 -92.46 -1.13 7.25 14 12 N -0.64 -15.35 10.40 -13.84 -0.14 -15.50 14 13 C 0.31 7.31 8.51 -155.78 -1.33 5.98 14 14 N -0.57 -10.72 6.11 -11.88 -0.07 -10.79 14 15 H 0.41 6.14 8.96 -40.82 -0.37 5.77 14 16 C -0.04 -0.76 11.87 -16.44 -0.20 -0.95 14 17 C -0.14 -2.94 10.80 -39.80 -0.43 -3.37 14 18 C -0.27 -6.82 6.27 -104.57 -0.66 -7.47 14 19 H 0.29 7.04 8.72 -40.82 -0.36 6.68 14 20 H 0.17 3.21 8.06 -52.49 -0.42 2.79 14 21 H 0.16 2.07 8.06 -52.49 -0.42 1.64 14 22 H 0.13 2.49 8.06 -52.48 -0.42 2.07 14 LS Contribution 202.74 15.07 3.06 3.06 Total: -1.00 -30.07 202.74 -6.78 -36.85 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -1.23 Total: 1.04 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -4.73 Total: -1.84 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: 0.49 Total: -62.12 kcal Atomic # 14 Polarization: 27.37 SS G_CDS: -4.36 Total: 23.02 kcal Total LS contribution 3.06 Total: 3.06 kcal Total: -30.07 -6.78 -36.85 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044371009.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.163 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds