Wall clock time and date at job start Mon Mar 30 2020 02:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30627 * 1 3 3 Si 1.86794 * 120.00259 * 2 1 4 4 H 1.48496 * 109.47405 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47079 * 119.99997 * 3 2 1 6 6 H 1.48502 * 109.47165 * 239.99390 * 3 2 1 7 7 C 1.40249 * 119.99699 * 180.27184 * 2 1 3 8 8 H 1.07997 * 119.99865 * 3.14811 * 7 2 1 9 9 C 1.40570 * 120.00123 * 183.14051 * 7 2 1 10 10 N 1.34525 * 121.29388 * 6.74412 * 9 7 2 11 11 C 1.31316 * 120.82654 * 179.97438 * 10 9 7 12 12 N 1.31917 * 123.69128 * 359.97438 * 11 10 9 13 13 C 1.32539 * 121.64583 * 0.02562 * 12 11 10 14 14 N 1.37157 * 134.58936 * 179.97438 * 13 12 11 15 15 H 0.97000 * 125.51180 * 0.02562 * 14 13 12 16 16 C 1.36777 * 108.97015 * 180.02562 * 14 13 12 17 17 C 1.35164 * 109.55744 * 359.97438 * 16 14 13 18 18 C 1.40573 * 107.70168 * 359.74107 * 17 16 14 19 19 H 0.97003 * 120.00308 * 174.86910 * 1 2 3 20 20 H 1.07995 * 118.15674 * 179.97438 * 11 10 9 21 21 H 1.08000 * 125.21799 * 179.97438 * 16 14 13 22 22 H 1.08003 * 126.14844 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6176 0.0000 4 1 1.2754 2.7464 0.0006 5 1 3.0941 1.6963 1.2125 6 1 3.0942 1.6962 -1.2124 7 6 2.0074 -1.2146 -0.0058 8 1 1.4686 -2.1489 -0.0616 9 6 3.4116 -1.2160 0.0609 10 7 4.1025 -0.0800 0.2655 11 6 5.4141 -0.0919 0.3267 12 7 6.1429 -1.1839 0.1974 13 6 5.5880 -2.3699 -0.0082 14 7 6.0707 -3.6425 -0.1770 15 1 7.0071 -3.8955 -0.1699 16 6 5.0181 -4.4971 -0.3571 17 6 3.8589 -3.8038 -0.3079 18 6 4.1777 -2.4534 -0.0820 19 1 -0.4851 -0.8367 -0.0751 20 1 5.9251 0.8450 0.4922 21 1 5.1006 -5.5624 -0.5144 22 1 2.8659 -4.2142 -0.4174 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044371009.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:10 Heat of formation + Delta-G solvation = 36.589597 kcal Electronic energy + Delta-G solvation = -10987.754060 eV Core-core repulsion = 8927.696879 eV Total energy + Delta-G solvation = -2060.057181 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.15392 -39.04389 -36.20318 -33.87189 -31.79279 -30.38234 -27.80234 -23.90051 -23.67830 -21.45132 -20.52984 -19.33156 -17.53677 -16.61170 -16.32213 -15.88392 -15.02855 -14.44581 -14.24206 -13.93542 -13.83244 -13.62871 -12.78174 -12.31091 -11.87478 -11.49162 -11.08430 -10.74603 -9.79059 -9.71419 -9.15890 -8.95706 -6.97513 0.35755 0.91222 1.65287 1.75467 2.00724 2.06510 2.13659 2.51633 2.68102 3.59922 3.84919 4.02627 4.23633 4.35798 4.56694 4.99053 5.17448 5.20867 5.44390 5.70982 5.83023 5.94364 6.30285 6.49453 6.57689 7.02032 7.75420 7.92536 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.053120 B = 0.015860 C = 0.012307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.985849 B = 1764.994388 C = 2274.521922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.022 3.978 3 Si 1.184 2.816 4 H -0.323 1.323 5 H -0.271 1.271 6 H -0.295 1.295 7 C -0.454 4.454 8 H 0.078 0.922 9 C 0.277 3.723 10 N -0.653 5.653 11 C 0.337 3.663 12 N -0.638 5.638 13 C 0.278 3.722 14 N -0.552 5.552 15 H 0.428 0.572 16 C 0.014 3.986 17 C -0.184 4.184 18 C -0.302 4.302 19 H 0.289 0.711 20 H 0.203 0.797 21 H 0.220 0.780 22 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.844 -5.216 -0.701 8.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.200 4.200 3 Si 1.015 2.985 4 H -0.256 1.256 5 H -0.198 1.198 6 H -0.223 1.223 7 C -0.488 4.488 8 H 0.096 0.904 9 C 0.149 3.851 10 N -0.385 5.385 11 C 0.046 3.954 12 N -0.369 5.369 13 C 0.044 3.956 14 N -0.159 5.159 15 H 0.268 0.732 16 C -0.111 4.111 17 C -0.210 4.210 18 C -0.312 4.312 19 H 0.100 0.900 20 H 0.219 0.781 21 H 0.237 0.763 22 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.146 -3.080 -0.502 7.798 hybrid contribution -0.252 -2.776 -0.203 2.795 sum 6.895 -5.856 -0.706 9.074 Atomic orbital electron populations 1.70613 1.08378 1.33449 1.29167 1.28719 0.95474 1.07889 0.87876 0.81477 0.70043 0.67378 0.79614 1.25585 1.19847 1.22278 1.20796 0.90968 0.96522 1.40531 0.90403 1.19706 0.93447 0.86436 0.85539 1.67476 1.09993 1.28019 1.33056 1.24347 0.86576 0.95452 0.88986 1.66928 1.41274 0.97047 1.31651 1.18642 0.89624 0.87406 0.99915 1.41396 1.09798 1.03237 1.61509 0.73204 1.22361 0.84274 0.96783 1.07725 1.20539 0.98966 0.91595 1.09907 1.20702 0.94999 0.96501 1.19024 0.89974 0.78064 0.76309 0.84610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -41.90 13.64 21.88 0.30 -41.60 14 2 C 0.02 1.17 5.52 85.36 0.47 1.64 14 3 Si 1.18 56.03 25.63 68.60 1.76 57.79 14 4 H -0.32 -14.73 7.11 99.48 0.71 -14.02 14 5 H -0.27 -12.73 6.67 99.48 0.66 -12.07 14 6 H -0.29 -14.08 7.11 99.48 0.71 -13.37 14 7 C -0.45 -24.89 9.63 23.33 0.22 -24.67 14 8 H 0.08 4.26 8.05 -2.91 -0.02 4.24 14 9 C 0.28 14.97 6.55 41.38 0.27 15.25 14 10 N -0.65 -33.66 4.85 -189.59 -0.92 -34.58 14 11 C 0.34 15.50 12.17 180.99 2.20 17.70 14 12 N -0.64 -29.32 10.40 -197.70 -2.06 -31.38 14 13 C 0.28 12.52 8.51 134.22 1.14 13.66 14 14 N -0.55 -18.49 6.11 -191.50 -1.17 -19.66 14 15 H 0.43 10.83 8.96 -92.71 -0.83 10.00 14 16 C 0.01 0.44 11.87 83.21 0.99 1.43 14 17 C -0.18 -7.43 10.80 22.13 0.24 -7.19 14 18 C -0.30 -14.86 6.27 -19.83 -0.12 -14.98 14 19 H 0.29 14.55 8.72 -92.71 -0.81 13.74 14 20 H 0.20 7.43 8.06 -2.91 -0.02 7.41 14 21 H 0.22 4.04 8.06 -2.91 -0.02 4.01 14 22 H 0.14 5.14 8.06 -2.91 -0.02 5.12 14 Total: -1.00 -65.20 202.74 3.67 -61.53 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: 0.34 Total: 5.06 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 5.42 Total: 2.84 kcal Atomic # 7 Polarization: -123.37 SS G_CDS: -3.85 Total: -127.22 kcal Atomic # 14 Polarization: 56.03 SS G_CDS: 1.76 Total: 57.79 kcal Total: -65.20 3.67 -61.53 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044371009.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.120 kcal (2) G-P(sol) polarization free energy of solvation -65.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds