Wall clock time and date at job start Mon Mar 30 2020 02:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38803 * 119.99580 * 2 1 4 4 H 1.08004 * 119.99736 * 204.62135 * 3 2 1 5 5 C 1.40661 * 120.00403 * 24.63221 * 3 2 1 6 6 N 1.30537 * 120.00008 * 5.76291 * 5 3 2 7 7 Si 1.86798 * 120.00326 * 185.76849 * 5 3 2 8 8 H 1.48491 * 109.47445 * 89.99387 * 7 5 3 9 9 H 1.48503 * 109.47027 * 209.99760 * 7 5 3 10 10 H 1.48502 * 109.47061 * 329.99395 * 7 5 3 11 11 C 1.38200 * 119.99955 * 179.72876 * 2 1 3 12 12 C 1.46314 * 119.99908 * 351.76880 * 11 2 1 13 13 C 1.40369 * 120.21715 * 327.15342 * 12 11 2 14 14 C 1.37730 * 119.77640 * 179.74767 * 13 12 11 15 15 C 1.38546 * 120.21786 * 0.50709 * 14 13 12 16 16 C 1.38543 * 120.43994 * 359.76568 * 15 14 13 17 17 C 1.37721 * 120.21882 * 359.97438 * 16 15 14 18 18 H 1.09007 * 109.46929 * 32.35856 * 1 2 3 19 19 H 1.08996 * 109.46817 * 152.35802 * 1 2 3 20 20 H 1.09003 * 109.46929 * 272.35798 * 1 2 3 21 21 H 0.96997 * 120.00567 * 180.02562 * 6 5 3 22 22 H 1.07997 * 119.99856 * 171.77048 * 11 2 1 23 23 H 1.08001 * 120.11217 * 359.97438 * 13 12 11 24 24 H 1.08002 * 119.89409 * 180.25686 * 14 13 12 25 25 H 1.08000 * 119.78297 * 179.74792 * 15 14 13 26 26 H 1.07999 * 119.89202 * 180.02562 * 16 15 14 27 27 H 1.08005 * 120.11265 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2010 1.2021 0.0000 4 1 3.2074 1.2447 -0.3897 5 6 1.5937 2.3649 0.5077 6 7 0.4231 2.2928 1.0809 7 14 2.4621 4.0122 0.3616 8 1 2.0733 4.6654 -0.9140 9 1 2.0718 4.8804 1.5014 10 1 3.9318 3.8005 0.3814 11 6 2.1981 -1.1968 0.0057 12 6 1.4778 -2.4565 0.1930 13 6 0.3336 -2.5021 1.0049 14 6 -0.3405 -3.6916 1.1708 15 6 0.1134 -4.8430 0.5480 16 6 1.2449 -4.8095 -0.2507 17 6 1.9297 -3.6287 -0.4334 18 1 -0.3633 0.8681 -0.5501 19 1 -0.3633 -0.9104 -0.4768 20 1 -0.3633 0.0423 1.0268 21 1 0.0041 3.0946 1.4307 22 1 3.2697 -1.2023 -0.1282 23 1 -0.0191 -1.6066 1.4949 24 1 -1.2234 -3.7279 1.7917 25 1 -0.4183 -5.7728 0.6862 26 1 1.5906 -5.7122 -0.7324 27 1 2.8114 -3.6045 -1.0567 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075543121.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:19 Heat of formation + Delta-G solvation = 7.222221 kcal Electronic energy + Delta-G solvation = -10761.696510 eV Core-core repulsion = 8869.332118 eV Total energy + Delta-G solvation = -1892.364392 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 188.090 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.68933 -37.14624 -34.17769 -31.66986 -30.96190 -28.19062 -26.73396 -22.91366 -22.81606 -20.36908 -18.24564 -17.21143 -16.85288 -15.91650 -15.54458 -14.82129 -14.46533 -14.25755 -13.71359 -13.47869 -13.06204 -12.93634 -12.80794 -12.37541 -12.08568 -11.91706 -11.48419 -11.34344 -11.09562 -10.12285 -9.59614 -8.89209 -8.64568 -6.35719 0.51275 0.77989 1.31810 1.36783 1.50268 1.94709 2.16319 3.00925 3.38615 4.27829 4.32525 4.47553 4.67172 4.77648 4.85387 4.94660 4.96473 5.08452 5.21960 5.40742 5.47671 5.58426 5.76068 5.85411 5.88334 6.03929 6.32694 6.41805 6.49453 6.93060 7.05339 8.17200 Molecular weight = 188.09amu Principal moments of inertia in cm(-1) A = 0.084332 B = 0.009119 C = 0.008425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 331.942114 B = 3069.716883 C = 3322.462676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.085 3.915 3 C -0.478 4.478 4 H 0.070 0.930 5 C 0.034 3.966 6 N -0.810 5.810 7 Si 0.991 3.009 8 H -0.257 1.257 9 H -0.261 1.261 10 H -0.263 1.263 11 C -0.427 4.427 12 C 0.020 3.980 13 C -0.180 4.180 14 C -0.114 4.114 15 C -0.179 4.179 16 C -0.109 4.109 17 C -0.185 4.185 18 H 0.041 0.959 19 H 0.034 0.966 20 H 0.060 0.940 21 H 0.296 0.704 22 H 0.068 0.932 23 H 0.107 0.893 24 H 0.133 0.867 25 H 0.141 0.859 26 H 0.139 0.861 27 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.687 -3.335 -0.198 3.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.082 3.918 3 C -0.506 4.506 4 H 0.089 0.911 5 C -0.184 4.184 6 N -0.435 5.435 7 Si 0.811 3.189 8 H -0.181 1.181 9 H -0.185 1.185 10 H -0.187 1.187 11 C -0.448 4.448 12 C 0.020 3.980 13 C -0.198 4.198 14 C -0.132 4.132 15 C -0.197 4.197 16 C -0.127 4.127 17 C -0.204 4.204 18 H 0.060 0.940 19 H 0.053 0.947 20 H 0.078 0.922 21 H 0.107 0.893 22 H 0.086 0.914 23 H 0.125 0.875 24 H 0.151 0.849 25 H 0.159 0.841 26 H 0.157 0.843 27 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.898 -3.190 -0.072 3.713 hybrid contribution 0.555 0.837 -0.063 1.006 sum -1.343 -2.353 -0.134 2.713 Atomic orbital electron populations 1.20661 0.93544 0.97761 1.00269 1.19621 0.94004 0.92781 0.85384 1.19702 1.01041 0.94352 1.35504 0.91143 1.27047 0.95101 1.04626 0.91605 1.69723 1.15035 1.33222 1.25481 0.85055 0.79162 0.75193 0.79465 1.18144 1.18533 1.18659 1.21043 0.95715 0.91266 1.36772 1.19177 0.93149 0.93549 0.92155 1.21672 0.98276 0.98428 1.01431 1.21238 0.99702 0.92566 0.99674 1.21269 0.98588 0.98565 1.01239 1.21217 0.95642 0.97332 0.98511 1.21462 1.02341 0.93589 1.02958 0.94013 0.94720 0.92177 0.89254 0.91378 0.87497 0.84938 0.84091 0.84310 0.87274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -3.34 6.46 71.24 0.46 -2.88 15 2 C 0.08 4.67 5.63 -19.74 -0.11 4.56 15 3 C -0.48 -25.95 8.97 23.00 0.21 -25.74 15 4 H 0.07 3.79 7.86 -2.91 -0.02 3.77 15 5 C 0.03 1.66 5.29 85.48 0.45 2.11 15 6 N -0.81 -39.83 10.50 21.96 0.23 -39.60 15 7 Si 0.99 36.84 29.57 68.60 2.03 38.87 15 8 H -0.26 -9.13 7.11 99.48 0.71 -8.42 15 9 H -0.26 -9.06 7.11 99.48 0.71 -8.35 15 10 H -0.26 -9.80 7.11 99.48 0.71 -9.09 15 11 C -0.43 -23.15 9.59 24.36 0.23 -22.92 15 12 C 0.02 0.96 5.28 -20.14 -0.11 0.86 15 13 C -0.18 -8.06 7.70 22.67 0.17 -7.89 15 14 C -0.11 -4.20 10.03 22.22 0.22 -3.97 15 15 C -0.18 -5.91 10.05 22.42 0.23 -5.68 15 16 C -0.11 -3.80 10.03 22.22 0.22 -3.58 15 17 C -0.19 -7.81 9.82 22.67 0.22 -7.59 15 18 H 0.04 2.12 7.18 -2.38 -0.02 2.10 15 19 H 0.03 1.68 6.23 -2.39 -0.01 1.66 15 20 H 0.06 3.06 6.30 -2.39 -0.02 3.05 15 21 H 0.30 12.94 8.29 -92.71 -0.77 12.17 15 22 H 0.07 3.78 8.06 -2.91 -0.02 3.75 15 23 H 0.11 5.03 5.31 -2.91 -0.02 5.01 15 24 H 0.13 4.03 8.06 -2.91 -0.02 4.01 15 25 H 0.14 3.57 8.06 -2.91 -0.02 3.54 15 26 H 0.14 3.77 8.06 -2.91 -0.02 3.75 15 27 H 0.11 4.38 8.06 -2.91 -0.02 4.35 15 Total: -1.00 -57.77 231.68 5.61 -52.16 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 1.15 Total: 21.30 kcal Atomic # 6 Polarization: -74.92 SS G_CDS: 2.20 Total: -72.72 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.23 Total: -39.60 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 2.03 Total: 38.87 kcal Total: -57.77 5.61 -52.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075543121.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.377 kcal (2) G-P(sol) polarization free energy of solvation -57.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds