Wall clock time and date at job start Mon Mar 30 2020 01:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00073 * 2 1 4 4 H 1.48497 * 109.47197 * 264.81292 * 3 2 1 5 5 H 1.48508 * 109.47035 * 24.81045 * 3 2 1 6 6 H 1.48501 * 109.47253 * 144.81110 * 3 2 1 7 7 C 1.37878 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99722 * 4.53968 * 7 2 1 9 9 C 1.50699 * 120.00316 * 184.53043 * 7 2 1 10 10 H 1.09003 * 110.26499 * 333.28836 * 9 7 2 11 11 C 1.54341 * 110.30293 * 95.36304 * 9 7 2 12 12 C 1.54348 * 102.57225 * 145.16821 * 11 9 7 13 13 C 1.51676 * 105.01540 * 333.89455 * 12 11 9 14 14 C 1.38497 * 130.30298 * 197.10160 * 13 12 11 15 15 C 1.38100 * 120.21567 * 179.79141 * 14 13 12 16 16 C 1.38256 * 119.93212 * 0.02562 * 15 14 13 17 17 C 1.38099 * 119.93479 * 359.97438 * 16 15 14 18 18 C 1.38206 * 109.84247 * 16.92344 * 13 12 11 19 19 H 0.97000 * 119.99748 * 0.02562 * 1 2 3 20 20 H 1.08999 * 110.82314 * 263.49396 * 11 9 7 21 21 H 1.09002 * 110.82503 * 26.84242 * 11 9 7 22 22 H 1.08999 * 110.30082 * 92.67725 * 12 11 9 23 23 H 1.09006 * 110.30060 * 214.83090 * 12 11 9 24 24 H 1.08000 * 119.89309 * 359.81276 * 14 13 12 25 25 H 1.07997 * 120.04012 * 180.02562 * 15 14 13 26 26 H 1.07999 * 120.03033 * 179.97438 * 16 15 14 27 27 H 1.08001 * 119.89006 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6063 1.9831 -1.3943 5 1 1.3961 2.6819 0.5875 6 1 3.4876 1.4743 0.8068 7 6 2.0046 -1.1940 0.0005 8 1 1.4671 -2.1279 -0.0731 9 6 3.5080 -1.1961 0.1036 10 1 3.9149 -0.2659 -0.2931 11 6 3.9439 -1.3882 1.5717 12 6 5.2316 -2.2278 1.4326 13 6 5.0745 -2.9742 0.1216 14 6 5.7448 -4.0852 -0.3626 15 6 5.4262 -4.6034 -1.6024 16 6 4.4354 -4.0115 -2.3636 17 6 3.7659 -2.9036 -1.8824 18 6 4.0839 -2.3826 -0.6392 19 1 -0.4850 0.8401 -0.0004 20 1 4.1563 -0.4280 2.0417 21 1 3.1849 -1.9331 2.1331 22 1 6.1051 -1.5769 1.3941 23 1 5.3176 -2.9287 2.2630 24 1 6.5190 -4.5480 0.2314 25 1 5.9504 -5.4701 -1.9771 26 1 4.1852 -4.4152 -3.3336 27 1 2.9917 -2.4421 -2.4775 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075543125.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:08 Heat of formation + Delta-G solvation = -4.946964 kcal Electronic energy + Delta-G solvation = -11067.783452 eV Core-core repulsion = 9174.891365 eV Total energy + Delta-G solvation = -1892.892087 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 188.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.78038 -36.71589 -34.51772 -32.25104 -29.88814 -29.16521 -25.38662 -23.35662 -21.56515 -21.15198 -19.12268 -17.29535 -16.36620 -15.86259 -15.71234 -15.30636 -14.74812 -14.02203 -13.90232 -13.46354 -13.35649 -12.86368 -12.42719 -12.38277 -11.83106 -11.77026 -11.69023 -11.28087 -11.23351 -10.74770 -9.56018 -9.21217 -8.30335 -6.33585 0.60647 0.66802 1.33733 1.34061 1.45715 2.33358 3.01577 3.04318 3.79040 3.98382 4.30215 4.33014 4.39217 4.49537 4.67797 4.79476 4.91433 4.94045 5.10659 5.25659 5.29224 5.45711 5.49933 5.66375 5.69712 5.77970 6.05918 6.25542 6.35435 6.71129 7.30449 8.86847 Molecular weight = 188.09amu Principal moments of inertia in cm(-1) A = 0.049068 B = 0.013306 C = 0.011724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.503148 B = 2103.828032 C = 2387.637066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.011 3.989 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.241 1.241 7 C -0.504 4.504 8 H 0.024 0.976 9 C 0.035 3.965 10 H 0.044 0.956 11 C -0.119 4.119 12 C -0.071 4.071 13 C -0.124 4.124 14 C -0.114 4.114 15 C -0.131 4.131 16 C -0.129 4.129 17 C -0.130 4.130 18 C -0.090 4.090 19 H 0.266 0.734 20 H 0.067 0.933 21 H 0.052 0.948 22 H 0.090 0.910 23 H 0.087 0.913 24 H 0.146 0.854 25 H 0.155 0.845 26 H 0.141 0.859 27 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.357 -4.891 -0.419 14.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.186 4.186 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.164 1.164 7 C -0.542 4.542 8 H 0.043 0.957 9 C 0.016 3.984 10 H 0.062 0.938 11 C -0.157 4.157 12 C -0.108 4.108 13 C -0.124 4.124 14 C -0.131 4.131 15 C -0.149 4.149 16 C -0.147 4.147 17 C -0.148 4.148 18 C -0.091 4.091 19 H 0.075 0.925 20 H 0.086 0.914 21 H 0.071 0.929 22 H 0.108 0.892 23 H 0.106 0.894 24 H 0.164 0.836 25 H 0.172 0.828 26 H 0.159 0.841 27 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.196 -4.781 -0.410 14.042 hybrid contribution -0.721 0.889 -0.209 1.163 sum 12.476 -3.892 -0.619 13.084 Atomic orbital electron populations 1.70060 1.08268 1.28090 1.52675 1.25970 0.95500 1.02996 0.94139 0.85803 0.79612 0.78550 0.79435 1.19509 1.21073 1.16399 1.21076 0.90877 0.92707 1.49578 0.95719 1.18838 0.93836 0.92907 0.92772 0.93818 1.22508 0.96341 0.99506 0.97320 1.21101 0.98031 0.97828 0.93857 1.21075 0.96807 0.96853 0.97622 1.20921 1.00278 0.95223 0.96705 1.21324 0.98185 1.00909 0.94469 1.21285 0.96961 0.95524 1.00892 1.20826 1.00134 0.97827 0.96004 1.21080 0.95653 0.97756 0.94575 0.92502 0.91400 0.92947 0.89155 0.89447 0.83643 0.82766 0.84142 0.88410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.30 13.96 21.45 0.30 -60.00 15 2 C 0.01 0.63 5.47 84.65 0.46 1.09 15 3 Si 0.94 44.48 26.99 68.60 1.85 46.33 15 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 15 5 H -0.28 -13.18 7.11 99.48 0.71 -12.47 15 6 H -0.24 -10.33 6.73 99.48 0.67 -9.66 15 7 C -0.50 -29.60 8.62 25.60 0.22 -29.38 15 8 H 0.02 1.63 8.06 -2.91 -0.02 1.61 15 9 C 0.04 1.69 2.41 -11.62 -0.03 1.66 15 10 H 0.04 2.10 5.48 -2.39 -0.01 2.09 15 11 C -0.12 -4.89 6.57 31.51 0.21 -4.69 15 12 C -0.07 -2.33 6.80 30.62 0.21 -2.13 15 13 C -0.12 -4.51 6.14 -19.50 -0.12 -4.63 15 14 C -0.11 -3.36 10.04 22.30 0.22 -3.13 15 15 C -0.13 -3.65 10.05 22.24 0.22 -3.43 15 16 C -0.13 -4.18 10.05 22.24 0.22 -3.96 15 17 C -0.13 -5.42 9.78 22.30 0.22 -5.20 15 18 C -0.09 -3.99 5.60 -19.60 -0.11 -4.10 15 19 H 0.27 15.74 8.31 -92.71 -0.77 14.97 15 20 H 0.07 2.59 8.01 -2.39 -0.02 2.57 15 21 H 0.05 2.31 7.90 -2.39 -0.02 2.29 15 22 H 0.09 2.54 8.14 -2.39 -0.02 2.52 15 23 H 0.09 2.42 8.14 -2.38 -0.02 2.40 15 24 H 0.15 3.22 8.06 -2.91 -0.02 3.20 15 25 H 0.15 3.02 8.06 -2.91 -0.02 3.00 15 26 H 0.14 3.68 8.06 -2.91 -0.02 3.66 15 27 H 0.10 4.36 8.06 -2.91 -0.02 4.34 15 Total: -1.00 -67.70 229.68 4.99 -62.71 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 1.11 Total: 8.84 kcal Atomic # 6 Polarization: -59.61 SS G_CDS: 1.73 Total: -57.88 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: 0.30 Total: -60.00 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.85 Total: 46.33 kcal Total: -67.70 4.99 -62.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075543125.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.763 kcal (2) G-P(sol) polarization free energy of solvation -67.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds