Wall clock time and date at job start Mon Mar 30 2020 01:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 119.99962 * 2 1 4 4 H 1.48493 * 109.47069 * 359.97438 * 3 2 1 5 5 H 1.48508 * 109.46823 * 120.00060 * 3 2 1 6 6 H 1.48502 * 109.46962 * 239.99657 * 3 2 1 7 7 C 1.37877 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00319 * 185.64138 * 7 2 1 9 9 C 1.50702 * 120.00005 * 5.64687 * 7 2 1 10 10 H 1.09000 * 110.27055 * 33.20970 * 9 7 2 11 11 C 1.54340 * 110.30129 * 271.03169 * 9 7 2 12 12 C 1.54347 * 102.39103 * 267.42324 * 11 9 7 13 13 C 1.51361 * 105.17223 * 333.65148 * 12 11 9 14 14 C 1.38499 * 130.39279 * 197.18962 * 13 12 11 15 15 C 1.38104 * 120.21379 * 180.02562 * 14 13 12 16 16 C 1.38254 * 119.93707 * 359.97043 * 15 14 13 17 17 C 1.38101 * 119.93532 * 0.02562 * 16 15 14 18 18 C 1.38221 * 109.75586 * 17.19193 * 13 12 11 19 19 H 0.97000 * 120.00174 * 175.09755 * 1 2 3 20 20 H 1.08997 * 110.82596 * 25.64764 * 11 9 7 21 21 H 1.08999 * 110.82350 * 149.20115 * 11 9 7 22 22 H 1.09006 * 110.30187 * 214.72649 * 12 11 9 23 23 H 1.09004 * 110.38628 * 92.62232 * 12 11 9 24 24 H 1.07993 * 119.89249 * 359.97438 * 14 13 12 25 25 H 1.08006 * 120.03214 * 179.97438 * 15 14 13 26 26 H 1.08005 * 120.03179 * 179.97438 * 16 15 14 27 27 H 1.07991 * 119.89357 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6964 -1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0805 -1.1963 0.0925 9 6 1.2564 -2.4961 -0.1273 10 1 0.3776 -2.3663 -0.7589 11 6 0.8448 -3.0162 1.2663 12 6 2.0258 -3.9378 1.6380 13 6 2.6025 -4.3956 0.3155 14 6 3.4472 -5.4534 0.0228 15 6 3.8491 -5.6823 -1.2784 16 6 3.4069 -4.8538 -2.2930 17 6 2.5645 -3.7986 -2.0032 18 6 2.1604 -3.5672 -0.6988 19 1 -0.4850 -0.8370 -0.0718 20 1 0.7566 -2.1939 1.9763 21 1 -0.0851 -3.5820 1.2096 22 1 1.6714 -4.7936 2.2127 23 1 2.7743 -3.3854 2.2061 24 1 3.7933 -6.1008 0.8149 25 1 4.5083 -6.5079 -1.5033 26 1 3.7206 -5.0312 -3.3112 27 1 2.2192 -3.1521 -2.7963 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075543127.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:11 Heat of formation + Delta-G solvation = 6.813682 kcal Electronic energy + Delta-G solvation = -11087.938226 eV Core-core repulsion = 9195.556119 eV Total energy + Delta-G solvation = -1892.382107 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 188.090 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.28233 -35.26128 -32.50129 -30.51944 -28.06792 -26.76088 -23.75416 -21.86010 -20.13218 -19.81692 -16.92276 -15.37118 -14.79488 -14.32550 -13.98557 -13.72315 -12.86771 -12.57824 -12.13269 -11.93720 -11.30490 -10.89830 -10.73679 -10.44057 -10.30177 -10.12719 -10.06849 -9.52979 -8.90092 -8.34193 -8.14100 -7.62915 -6.38784 -4.09518 2.02367 2.12196 3.42880 3.44501 3.63289 4.42262 4.56835 5.20190 5.34834 5.49996 5.62866 5.63782 5.96202 6.02685 6.18311 6.24404 6.37199 6.64537 6.73188 6.84954 6.97517 7.06212 7.10242 7.21150 7.38766 7.63256 7.72632 8.17439 8.41604 8.83525 9.61137 10.99747 Molecular weight = 188.09amu Principal moments of inertia in cm(-1) A = 0.048103 B = 0.012475 C = 0.011244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.941202 B = 2244.038667 C = 2489.548573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.021 3.979 3 Si 1.068 2.932 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.581 4.581 8 H 0.049 0.951 9 C 0.060 3.940 10 H 0.041 0.959 11 C -0.116 4.116 12 C -0.070 4.070 13 C -0.109 4.109 14 C -0.116 4.116 15 C -0.146 4.146 16 C -0.128 4.128 17 C -0.115 4.115 18 C -0.045 4.045 19 H 0.270 0.730 20 H 0.071 0.929 21 H 0.040 0.960 22 H 0.054 0.946 23 H 0.072 0.928 24 H 0.108 0.892 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.613 -7.560 -0.540 8.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.183 4.183 3 Si 0.896 3.104 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.619 4.619 8 H 0.068 0.932 9 C 0.041 3.959 10 H 0.059 0.941 11 C -0.154 4.154 12 C -0.107 4.107 13 C -0.109 4.109 14 C -0.134 4.134 15 C -0.164 4.164 16 C -0.146 4.146 17 C -0.133 4.133 18 C -0.045 4.045 19 H 0.082 0.918 20 H 0.090 0.910 21 H 0.059 0.941 22 H 0.073 0.927 23 H 0.091 0.909 24 H 0.126 0.874 25 H 0.130 0.870 26 H 0.130 0.870 27 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.404 -5.902 -0.472 7.380 hybrid contribution 0.373 -1.745 -0.134 1.789 sum 4.778 -7.647 -0.606 9.037 Atomic orbital electron populations 1.70794 1.06784 1.31125 1.45866 1.25842 0.96492 1.02460 0.93516 0.83556 0.74914 0.75300 0.76635 1.20735 1.21411 1.21413 1.21746 0.94607 0.90436 1.55091 0.93237 1.18569 0.93887 0.92040 0.91375 0.94066 1.22518 0.94690 0.97551 1.00668 1.20936 0.98165 0.98053 0.93517 1.20758 0.97894 0.95333 0.96905 1.20500 0.98881 0.97801 0.96197 1.20772 1.02152 1.00481 0.93035 1.20905 0.99010 0.96216 0.98475 1.20649 0.98745 0.97584 0.96325 1.21260 0.96268 0.94598 0.92350 0.91838 0.91005 0.94141 0.92726 0.90948 0.87400 0.87046 0.86967 0.86838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.96 13.63 55.43 0.76 -26.20 15 2 C 0.02 0.60 5.45 -17.82 -0.10 0.50 15 3 Si 1.07 25.05 29.91 -169.99 -5.08 19.97 15 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 15 6 H -0.29 -6.51 7.11 56.52 0.40 -6.11 15 7 C -0.58 -16.20 8.25 -34.44 -0.28 -16.49 15 8 H 0.05 1.42 7.82 -52.49 -0.41 1.01 15 9 C 0.06 1.52 2.45 -91.89 -0.23 1.29 15 10 H 0.04 1.11 6.89 -51.93 -0.36 0.76 15 11 C -0.12 -2.63 6.59 -25.32 -0.17 -2.80 15 12 C -0.07 -1.40 6.76 -26.85 -0.18 -1.58 15 13 C -0.11 -2.27 6.14 -104.21 -0.64 -2.91 15 14 C -0.12 -2.08 10.04 -39.53 -0.40 -2.48 15 15 C -0.15 -2.45 10.05 -39.62 -0.40 -2.85 15 16 C -0.13 -2.25 10.05 -39.63 -0.40 -2.65 15 17 C -0.11 -2.38 10.04 -39.53 -0.40 -2.78 15 18 C -0.04 -1.02 5.43 -104.20 -0.57 -1.59 15 19 H 0.27 7.94 6.75 -40.82 -0.28 7.67 15 20 H 0.07 1.73 7.89 -51.93 -0.41 1.32 15 21 H 0.04 0.85 8.14 -51.93 -0.42 0.42 15 22 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 23 H 0.07 1.45 8.14 -51.93 -0.42 1.02 15 24 H 0.11 1.64 8.06 -52.49 -0.42 1.22 15 25 H 0.11 1.50 8.06 -52.48 -0.42 1.08 15 26 H 0.11 1.63 8.06 -52.48 -0.42 1.20 15 27 H 0.11 2.28 8.06 -52.49 -0.42 1.86 15 LS Contribution 232.11 15.07 3.50 3.50 Total: -1.00 -29.59 232.11 -7.79 -37.37 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -3.21 Total: -0.32 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: -3.75 Total: -34.32 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.76 Total: -26.20 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.08 Total: 19.97 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -29.59 -7.79 -37.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075543127.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.188 kcal (2) G-P(sol) polarization free energy of solvation -29.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds