Wall clock time and date at job start Mon Mar 30 2020 01:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 119.99962 * 2 1 4 4 H 1.48493 * 109.47069 * 359.97438 * 3 2 1 5 5 H 1.48508 * 109.46823 * 120.00060 * 3 2 1 6 6 H 1.48502 * 109.46962 * 239.99657 * 3 2 1 7 7 C 1.37877 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00319 * 185.64138 * 7 2 1 9 9 C 1.50702 * 120.00005 * 5.64687 * 7 2 1 10 10 H 1.09000 * 110.27055 * 33.20970 * 9 7 2 11 11 C 1.54340 * 110.30129 * 271.03169 * 9 7 2 12 12 C 1.54347 * 102.39103 * 267.42324 * 11 9 7 13 13 C 1.51361 * 105.17223 * 333.65148 * 12 11 9 14 14 C 1.38499 * 130.39279 * 197.18962 * 13 12 11 15 15 C 1.38104 * 120.21379 * 180.02562 * 14 13 12 16 16 C 1.38254 * 119.93707 * 359.97043 * 15 14 13 17 17 C 1.38101 * 119.93532 * 0.02562 * 16 15 14 18 18 C 1.38221 * 109.75586 * 17.19193 * 13 12 11 19 19 H 0.97000 * 120.00174 * 175.09755 * 1 2 3 20 20 H 1.08997 * 110.82596 * 25.64764 * 11 9 7 21 21 H 1.08999 * 110.82350 * 149.20115 * 11 9 7 22 22 H 1.09006 * 110.30187 * 214.72649 * 12 11 9 23 23 H 1.09004 * 110.38628 * 92.62232 * 12 11 9 24 24 H 1.07993 * 119.89249 * 359.97438 * 14 13 12 25 25 H 1.08006 * 120.03214 * 179.97438 * 15 14 13 26 26 H 1.08005 * 120.03179 * 179.97438 * 16 15 14 27 27 H 1.07991 * 119.89357 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6964 -1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0805 -1.1963 0.0925 9 6 1.2564 -2.4961 -0.1273 10 1 0.3776 -2.3663 -0.7589 11 6 0.8448 -3.0162 1.2663 12 6 2.0258 -3.9378 1.6380 13 6 2.6025 -4.3956 0.3155 14 6 3.4472 -5.4534 0.0228 15 6 3.8491 -5.6823 -1.2784 16 6 3.4069 -4.8538 -2.2930 17 6 2.5645 -3.7986 -2.0032 18 6 2.1604 -3.5672 -0.6988 19 1 -0.4850 -0.8370 -0.0718 20 1 0.7566 -2.1939 1.9763 21 1 -0.0851 -3.5820 1.2096 22 1 1.6714 -4.7936 2.2127 23 1 2.7743 -3.3854 2.2061 24 1 3.7933 -6.1008 0.8149 25 1 4.5083 -6.5079 -1.5033 26 1 3.7206 -5.0312 -3.3112 27 1 2.2192 -3.1521 -2.7963 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075543127.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:10 Heat of formation + Delta-G solvation = -9.105735 kcal Electronic energy + Delta-G solvation = -11088.628544 eV Core-core repulsion = 9195.556119 eV Total energy + Delta-G solvation = -1893.072425 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 188.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.86514 -36.96105 -34.48545 -32.09138 -29.66094 -28.57630 -25.79321 -23.41336 -21.65686 -21.60589 -18.92536 -16.97101 -16.45173 -15.88036 -15.72941 -15.51999 -14.71226 -14.02994 -13.85428 -13.52178 -13.14718 -12.74333 -12.37962 -12.14987 -12.00230 -11.96923 -11.71648 -11.33744 -10.88340 -10.46117 -9.62752 -9.28338 -8.61871 -6.34721 0.54834 0.62337 1.50746 1.58227 1.78178 2.54255 2.98030 3.15703 3.72388 3.93681 4.24405 4.26109 4.29926 4.44530 4.63168 4.76998 4.80025 5.01982 5.06118 5.13947 5.26518 5.37227 5.45680 5.64181 5.73927 5.98322 6.04675 6.18312 6.24048 6.60675 7.43473 8.74558 Molecular weight = 188.09amu Principal moments of inertia in cm(-1) A = 0.048103 B = 0.012475 C = 0.011244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.941202 B = 2244.038667 C = 2489.548573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.029 4.029 3 Si 1.113 2.887 4 H -0.281 1.281 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.588 4.588 8 H 0.037 0.963 9 C 0.051 3.949 10 H 0.005 0.995 11 C -0.113 4.113 12 C -0.062 4.062 13 C -0.123 4.123 14 C -0.113 4.113 15 C -0.133 4.133 16 C -0.122 4.122 17 C -0.138 4.138 18 C -0.088 4.088 19 H 0.258 0.742 20 H 0.047 0.953 21 H 0.050 0.950 22 H 0.088 0.912 23 H 0.069 0.931 24 H 0.144 0.856 25 H 0.158 0.842 26 H 0.147 0.853 27 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.776 -9.397 -0.562 11.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.227 4.227 3 Si 0.934 3.066 4 H -0.207 1.207 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.625 4.625 8 H 0.055 0.945 9 C 0.033 3.967 10 H 0.023 0.977 11 C -0.151 4.151 12 C -0.099 4.099 13 C -0.123 4.123 14 C -0.131 4.131 15 C -0.150 4.150 16 C -0.140 4.140 17 C -0.156 4.156 18 C -0.088 4.088 19 H 0.068 0.932 20 H 0.066 0.934 21 H 0.068 0.932 22 H 0.106 0.894 23 H 0.087 0.913 24 H 0.161 0.839 25 H 0.175 0.825 26 H 0.165 0.835 27 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.575 -7.765 -0.492 10.186 hybrid contribution -0.270 -1.290 -0.189 1.332 sum 6.304 -9.055 -0.681 11.055 Atomic orbital electron populations 1.70906 1.07671 1.30417 1.48226 1.27241 0.96586 1.06071 0.92787 0.82989 0.74194 0.71566 0.77819 1.20653 1.19582 1.19930 1.21990 0.94071 0.92108 1.54376 0.94464 1.18522 0.93110 0.92610 0.92481 0.97671 1.22353 0.96693 0.97567 0.98476 1.20861 0.96674 0.98436 0.93930 1.20917 0.99036 0.96255 0.96104 1.20926 0.97361 0.96808 0.97981 1.21334 1.01048 1.00626 0.92012 1.21295 0.97288 0.94642 1.00751 1.20811 1.00252 0.99185 0.95362 1.21161 0.98024 0.95429 0.94214 0.93175 0.93418 0.93171 0.89355 0.91270 0.83865 0.82486 0.83497 0.87911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.69 13.63 21.45 0.29 -57.40 15 2 C -0.03 -1.67 5.45 84.66 0.46 -1.21 15 3 Si 1.11 51.10 29.91 68.60 2.05 53.16 15 4 H -0.28 -12.80 7.11 99.48 0.71 -12.10 15 5 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 6 H -0.27 -11.85 7.11 99.48 0.71 -11.15 15 7 C -0.59 -34.00 8.25 25.60 0.21 -33.79 15 8 H 0.04 2.19 7.82 -2.91 -0.02 2.17 15 9 C 0.05 2.73 2.45 -11.62 -0.03 2.70 15 10 H 0.01 0.30 6.89 -2.39 -0.02 0.28 15 11 C -0.11 -5.26 6.59 31.51 0.21 -5.06 15 12 C -0.06 -2.42 6.76 30.52 0.21 -2.22 15 13 C -0.12 -4.93 6.14 -19.60 -0.12 -5.05 15 14 C -0.11 -3.59 10.04 22.30 0.22 -3.37 15 15 C -0.13 -3.77 10.05 22.24 0.22 -3.55 15 16 C -0.12 -3.90 10.05 22.24 0.22 -3.67 15 17 C -0.14 -5.70 10.04 22.30 0.22 -5.47 15 18 C -0.09 -4.09 5.43 -19.59 -0.11 -4.20 15 19 H 0.26 16.09 6.75 -92.71 -0.63 15.47 15 20 H 0.05 2.39 7.89 -2.39 -0.02 2.37 15 21 H 0.05 2.17 8.14 -2.39 -0.02 2.15 15 22 H 0.09 2.81 8.14 -2.38 -0.02 2.79 15 23 H 0.07 2.71 8.14 -2.38 -0.02 2.69 15 24 H 0.14 3.53 8.06 -2.91 -0.02 3.51 15 25 H 0.16 3.11 8.06 -2.91 -0.02 3.09 15 26 H 0.15 3.61 8.06 -2.91 -0.02 3.59 15 27 H 0.10 4.28 8.06 -2.92 -0.02 4.26 15 Total: -1.00 -66.24 232.11 5.35 -60.89 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 1.28 Total: 8.24 kcal Atomic # 6 Polarization: -66.61 SS G_CDS: 1.73 Total: -64.88 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.29 Total: -57.40 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 2.05 Total: 53.16 kcal Total: -66.24 5.35 -60.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075543127.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.781 kcal (2) G-P(sol) polarization free energy of solvation -66.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds