Wall clock time and date at job start Mon Mar 30 2020 01:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42093 * 109.47007 * 2 1 4 4 C 1.81400 * 103.00109 * 116.38756 * 2 1 3 5 5 C 1.52994 * 109.47571 * 174.79474 * 4 2 1 6 6 C 1.50706 * 115.55673 * 39.46741 * 5 4 2 7 7 H 1.08007 * 119.99689 * 271.09547 * 6 5 4 8 8 C 1.37876 * 120.00147 * 91.10409 * 6 5 4 9 9 N 1.31520 * 119.99904 * 176.54608 * 8 6 5 10 10 Si 1.86801 * 119.99979 * 356.54101 * 8 6 5 11 11 H 1.48493 * 109.46890 * 84.83609 * 10 8 6 12 12 H 1.48501 * 109.47032 * 204.83794 * 10 8 6 13 13 H 1.48505 * 109.46873 * 324.83325 * 10 8 6 14 14 C 1.52993 * 117.50209 * 185.15399 * 5 4 2 15 15 C 1.53004 * 60.03299 * 107.48070 * 14 5 4 16 16 H 1.08999 * 109.47061 * 303.61033 * 1 2 3 17 17 H 1.08998 * 109.47241 * 63.61171 * 1 2 3 18 18 H 1.09001 * 109.46851 * 183.61508 * 1 2 3 19 19 H 1.09006 * 109.46825 * 54.79332 * 4 2 1 20 20 H 1.09007 * 109.47152 * 294.80046 * 4 2 1 21 21 H 0.96996 * 119.99685 * 179.97438 * 9 8 6 22 22 H 1.09008 * 117.49939 * 214.97966 * 14 5 4 23 23 H 1.08997 * 117.50143 * 359.97438 * 14 5 4 24 24 H 1.08996 * 117.49904 * 107.49901 * 15 14 5 25 25 H 1.08997 * 117.49686 * 252.52688 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2221 -0.7856 1.5833 5 6 3.7365 -0.9800 1.6809 6 6 4.5734 0.1510 1.1410 7 1 4.8608 0.1610 0.1000 8 6 4.9723 1.1731 1.9761 9 7 5.7587 2.1244 1.5219 10 14 4.3956 1.2066 3.7526 11 1 5.2957 0.3650 4.5811 12 1 4.4224 2.6037 4.2554 13 1 3.0102 0.6780 3.8333 14 6 4.2744 -1.7398 2.8951 15 6 4.2785 -2.4021 1.5158 16 1 -0.3633 0.5688 0.8559 17 1 -0.3633 0.4567 -0.9206 18 1 -0.3633 -1.0256 0.0648 19 1 1.7265 -1.7544 1.6466 20 1 1.8838 -0.1503 2.4020 21 1 6.0390 2.8435 2.1093 22 1 5.2338 -1.4215 3.3034 23 1 3.5495 -2.1007 3.6246 24 1 5.2404 -2.5195 1.0167 25 1 3.5559 -3.1984 1.3378 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862584.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:38 Heat of formation + Delta-G solvation = -8.824275 kcal Electronic energy + Delta-G solvation = -10148.543989 eV Core-core repulsion = 8255.094626 eV Total energy + Delta-G solvation = -1893.449363 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -36.89339 -34.57539 -31.97475 -28.58824 -27.75697 -25.22464 -21.62761 -19.06252 -16.79897 -15.97827 -14.94384 -14.26982 -14.04292 -13.76431 -13.26958 -12.73010 -12.43394 -12.32308 -12.04665 -11.15100 -10.89043 -10.57991 -10.37502 -10.15464 -9.62988 -9.40508 -8.91454 -8.47002 -8.39517 -7.28471 -6.01843 -4.05181 2.40265 3.32566 3.41767 3.43567 3.61476 4.49657 4.77595 4.93151 5.28657 5.56518 5.67891 5.81592 5.96995 6.16947 6.24812 6.29696 6.47378 6.50380 6.74964 7.08410 7.16192 7.78920 8.51171 9.00739 9.63307 11.11185 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.038259 B = 0.019778 C = 0.016511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.674627 B = 1415.343594 C = 1695.460672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.522 4.522 2 S 1.266 4.734 3 O -0.812 6.812 4 C -0.408 4.408 5 C 0.019 3.981 6 C -0.501 4.501 7 H 0.085 0.915 8 C 0.094 3.906 9 N -0.886 5.886 10 Si 0.879 3.121 11 H -0.277 1.277 12 H -0.297 1.297 13 H -0.267 1.267 14 C -0.203 4.203 15 C -0.176 4.176 16 H 0.066 0.934 17 H 0.092 0.908 18 H 0.098 0.902 19 H 0.089 0.911 20 H 0.075 0.925 21 H 0.263 0.737 22 H 0.088 0.912 23 H 0.070 0.930 24 H 0.089 0.911 25 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.979 -9.028 -1.652 12.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.675 4.675 2 S 1.461 4.539 3 O -0.808 6.808 4 C -0.546 4.546 5 C 0.017 3.983 6 C -0.538 4.538 7 H 0.102 0.898 8 C -0.110 4.110 9 N -0.522 5.522 10 Si 0.708 3.292 11 H -0.203 1.203 12 H -0.224 1.224 13 H -0.192 1.192 14 C -0.241 4.241 15 C -0.213 4.213 16 H 0.085 0.915 17 H 0.111 0.889 18 H 0.117 0.883 19 H 0.108 0.892 20 H 0.094 0.906 21 H 0.073 0.927 22 H 0.106 0.894 23 H 0.088 0.912 24 H 0.108 0.892 25 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.330 -8.460 -2.317 11.431 hybrid contribution -1.219 1.253 3.000 3.473 sum -8.549 -7.207 0.683 11.202 Atomic orbital electron populations 1.28073 1.27527 1.06280 1.05661 1.70342 0.82360 1.00293 1.00887 1.93224 1.70842 1.35575 1.81119 1.27425 1.03006 1.07152 1.17013 1.18870 0.88911 0.92222 0.98258 1.20248 1.32134 1.03470 0.97964 0.89753 1.24853 0.93399 0.94701 0.98029 1.69868 1.33732 1.12401 1.36234 0.86926 0.80120 0.76212 0.85945 1.20317 1.22366 1.19170 1.22979 1.02420 1.07351 0.91390 1.22933 1.02365 0.96287 0.99749 0.91458 0.88900 0.88315 0.89240 0.90619 0.92692 0.89407 0.91179 0.89235 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.52 -7.44 10.74 101.05 1.09 -6.36 15 2 S 1.27 22.93 13.16 -107.50 -1.41 21.52 15 3 O -0.81 -21.23 16.79 -35.23 -0.59 -21.82 15 4 C -0.41 -8.02 5.93 37.15 0.22 -7.80 15 5 C 0.02 0.44 1.16 -155.63 -0.18 0.26 15 6 C -0.50 -14.08 7.15 -34.44 -0.25 -14.32 15 7 H 0.08 2.55 8.06 -52.48 -0.42 2.12 15 8 C 0.09 2.84 5.47 -17.82 -0.10 2.75 15 9 N -0.89 -28.41 13.96 55.43 0.77 -27.64 15 10 Si 0.88 23.29 24.95 -169.99 -4.24 19.05 15 11 H -0.28 -6.99 6.84 56.52 0.39 -6.60 15 12 H -0.30 -7.98 7.11 56.52 0.40 -7.58 15 13 H -0.27 -6.82 5.68 56.52 0.32 -6.50 15 14 C -0.20 -4.33 7.57 -26.73 -0.20 -4.53 15 15 C -0.18 -3.34 9.89 -26.69 -0.26 -3.60 15 16 H 0.07 1.05 8.14 -51.92 -0.42 0.63 15 17 H 0.09 1.22 8.14 -51.93 -0.42 0.80 15 18 H 0.10 1.08 8.14 -51.92 -0.42 0.66 15 19 H 0.09 1.36 7.94 -51.92 -0.41 0.95 15 20 H 0.08 1.65 6.59 -51.92 -0.34 1.31 15 21 H 0.26 7.98 8.31 -40.82 -0.34 7.64 15 22 H 0.09 2.01 6.79 -51.92 -0.35 1.66 15 23 H 0.07 1.35 8.14 -51.93 -0.42 0.93 15 24 H 0.09 1.71 8.14 -51.93 -0.42 1.28 15 25 H 0.08 1.17 8.08 -51.93 -0.42 0.75 15 LS Contribution 222.88 15.07 3.36 3.36 Total: -1.00 -36.00 222.88 -5.09 -41.09 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -3.29 Total: -1.96 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 0.31 Total: -33.61 kcal Atomic # 7 Polarization: -28.41 SS G_CDS: 0.77 Total: -27.64 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.59 Total: -21.82 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -4.24 Total: 19.05 kcal Atomic # 16 Polarization: 22.93 SS G_CDS: -1.41 Total: 21.52 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -36.00 -5.09 -41.09 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862584.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.265 kcal (2) G-P(sol) polarization free energy of solvation -35.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds