Wall clock time and date at job start Mon Mar 30 2020 01:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42093 * 109.47007 * 2 1 4 4 C 1.81400 * 103.00109 * 116.38756 * 2 1 3 5 5 C 1.52994 * 109.47571 * 174.79474 * 4 2 1 6 6 C 1.50706 * 115.55673 * 39.46741 * 5 4 2 7 7 H 1.08007 * 119.99689 * 271.09547 * 6 5 4 8 8 C 1.37876 * 120.00147 * 91.10409 * 6 5 4 9 9 N 1.31520 * 119.99904 * 176.54608 * 8 6 5 10 10 Si 1.86801 * 119.99979 * 356.54101 * 8 6 5 11 11 H 1.48493 * 109.46890 * 84.83609 * 10 8 6 12 12 H 1.48501 * 109.47032 * 204.83794 * 10 8 6 13 13 H 1.48505 * 109.46873 * 324.83325 * 10 8 6 14 14 C 1.52993 * 117.50209 * 185.15399 * 5 4 2 15 15 C 1.53004 * 60.03299 * 107.48070 * 14 5 4 16 16 H 1.08999 * 109.47061 * 303.61033 * 1 2 3 17 17 H 1.08998 * 109.47241 * 63.61171 * 1 2 3 18 18 H 1.09001 * 109.46851 * 183.61508 * 1 2 3 19 19 H 1.09006 * 109.46825 * 54.79332 * 4 2 1 20 20 H 1.09007 * 109.47152 * 294.80046 * 4 2 1 21 21 H 0.96996 * 119.99685 * 179.97438 * 9 8 6 22 22 H 1.09008 * 117.49939 * 214.97966 * 14 5 4 23 23 H 1.08997 * 117.50143 * 359.97438 * 14 5 4 24 24 H 1.08996 * 117.49904 * 107.49901 * 15 14 5 25 25 H 1.08997 * 117.49686 * 252.52688 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2221 -0.7856 1.5833 5 6 3.7365 -0.9800 1.6809 6 6 4.5734 0.1510 1.1410 7 1 4.8608 0.1610 0.1000 8 6 4.9723 1.1731 1.9761 9 7 5.7587 2.1244 1.5219 10 14 4.3956 1.2066 3.7526 11 1 5.2957 0.3650 4.5811 12 1 4.4224 2.6037 4.2554 13 1 3.0102 0.6780 3.8333 14 6 4.2744 -1.7398 2.8951 15 6 4.2785 -2.4021 1.5158 16 1 -0.3633 0.5688 0.8559 17 1 -0.3633 0.4567 -0.9206 18 1 -0.3633 -1.0256 0.0648 19 1 1.7265 -1.7544 1.6466 20 1 1.8838 -0.1503 2.4020 21 1 6.0390 2.8435 2.1093 22 1 5.2338 -1.4215 3.3034 23 1 3.5495 -2.1007 3.6246 24 1 5.2404 -2.5195 1.0167 25 1 3.5559 -3.1984 1.3378 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862584.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:37 Heat of formation + Delta-G solvation = -37.415075 kcal Electronic energy + Delta-G solvation = -10149.783779 eV Core-core repulsion = 8255.094626 eV Total energy + Delta-G solvation = -1894.689153 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.59923 -36.32827 -34.18218 -29.92211 -29.25059 -27.31321 -23.22259 -20.93973 -18.60784 -17.73663 -16.88538 -15.86249 -15.66584 -15.28042 -14.86826 -14.78569 -14.13735 -13.79674 -13.38504 -13.09282 -12.66800 -12.33671 -12.11211 -11.94963 -11.56296 -11.18084 -10.80264 -10.48849 -10.10700 -8.82267 -8.29169 -6.31764 0.97676 1.21717 1.25724 1.33604 2.20618 2.32692 3.09456 3.28665 3.36497 4.19133 4.38097 4.42526 4.49634 4.63959 4.73498 4.90175 4.97813 5.19648 5.21585 5.41599 5.61446 5.77460 6.27755 6.77740 7.38731 8.88683 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.038259 B = 0.019778 C = 0.016511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.674627 B = 1415.343594 C = 1695.460672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.500 4.500 2 S 1.287 4.713 3 O -0.910 6.910 4 C -0.403 4.403 5 C -0.021 4.021 6 C -0.481 4.481 7 H 0.044 0.956 8 C 0.024 3.976 9 N -0.948 5.948 10 Si 0.928 3.072 11 H -0.257 1.257 12 H -0.311 1.311 13 H -0.248 1.248 14 C -0.209 4.209 15 C -0.140 4.140 16 H 0.055 0.945 17 H 0.107 0.893 18 H 0.148 0.852 19 H 0.149 0.851 20 H 0.052 0.948 21 H 0.258 0.742 22 H 0.063 0.937 23 H 0.100 0.900 24 H 0.081 0.919 25 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.605 -12.366 -0.868 16.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 1.487 4.513 3 O -0.905 6.905 4 C -0.540 4.540 5 C -0.023 4.023 6 C -0.520 4.520 7 H 0.062 0.938 8 C -0.173 4.173 9 N -0.588 5.588 10 Si 0.755 3.245 11 H -0.181 1.181 12 H -0.239 1.239 13 H -0.171 1.171 14 C -0.247 4.247 15 C -0.177 4.177 16 H 0.074 0.926 17 H 0.126 0.874 18 H 0.166 0.834 19 H 0.167 0.833 20 H 0.071 0.929 21 H 0.067 0.933 22 H 0.082 0.918 23 H 0.119 0.881 24 H 0.099 0.901 25 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.929 -11.835 -1.530 15.524 hybrid contribution -0.525 2.161 2.630 3.444 sum -10.453 -9.675 1.100 14.286 Atomic orbital electron populations 1.27826 1.22318 1.09576 1.06051 1.69048 0.84637 0.97618 0.99978 1.93115 1.75231 1.39274 1.82929 1.27310 1.00851 1.09881 1.15997 1.18840 0.90135 0.92550 1.00786 1.20553 1.30743 1.04622 0.96049 0.93811 1.25737 0.94227 0.94905 1.02422 1.70040 1.37020 1.14007 1.37754 0.86104 0.80985 0.75748 0.81636 1.18146 1.23941 1.17145 1.23032 1.01900 1.07265 0.92532 1.23060 1.02895 0.94713 0.97046 0.92552 0.87432 0.83389 0.83256 0.92891 0.93278 0.91836 0.88149 0.90052 0.85177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -12.01 10.74 113.37 1.22 -10.79 15 2 S 1.29 44.38 13.16 -56.49 -0.74 43.64 15 3 O -0.91 -49.04 16.79 -148.98 -2.50 -51.54 15 4 C -0.40 -14.23 5.93 71.98 0.43 -13.80 15 5 C -0.02 -0.92 1.16 -52.91 -0.06 -0.98 15 6 C -0.48 -27.70 7.15 25.60 0.18 -27.51 15 7 H 0.04 2.79 8.06 -2.91 -0.02 2.76 15 8 C 0.02 1.52 5.47 84.65 0.46 1.98 15 9 N -0.95 -64.33 13.96 21.45 0.30 -64.03 15 10 Si 0.93 48.60 24.95 68.60 1.71 50.31 15 11 H -0.26 -12.39 6.84 99.48 0.68 -11.71 15 12 H -0.31 -16.83 7.11 99.48 0.71 -16.13 15 13 H -0.25 -12.02 5.68 99.48 0.57 -11.46 15 14 C -0.21 -8.11 7.57 30.59 0.23 -7.88 15 15 C -0.14 -4.68 9.89 30.62 0.30 -4.37 15 16 H 0.06 1.54 8.14 -2.39 -0.02 1.53 15 17 H 0.11 2.38 8.14 -2.39 -0.02 2.36 15 18 H 0.15 2.18 8.14 -2.39 -0.02 2.16 15 19 H 0.15 3.43 7.94 -2.39 -0.02 3.42 15 20 H 0.05 2.12 6.59 -2.39 -0.02 2.11 15 21 H 0.26 16.69 8.31 -92.71 -0.77 15.92 15 22 H 0.06 2.77 6.79 -2.38 -0.02 2.75 15 23 H 0.10 3.30 8.14 -2.39 -0.02 3.29 15 24 H 0.08 2.85 8.14 -2.39 -0.02 2.83 15 25 H 0.13 2.99 8.08 -2.39 -0.02 2.97 15 Total: -1.00 -84.70 222.88 2.52 -82.18 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: 0.99 Total: 2.80 kcal Atomic # 6 Polarization: -66.13 SS G_CDS: 2.76 Total: -63.36 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: 0.30 Total: -64.03 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -2.50 Total: -51.54 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 1.71 Total: 50.31 kcal Atomic # 16 Polarization: 44.38 SS G_CDS: -0.74 Total: 43.64 kcal Total: -84.70 2.52 -82.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862584.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.765 kcal (2) G-P(sol) polarization free energy of solvation -84.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds