Wall clock time and date at job start Mon Mar 30 2020 02:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38562 * 119.89251 * 2 1 4 4 C 1.38517 * 120.44295 * 180.25892 * 3 2 1 5 5 C 1.37744 * 120.22110 * 359.78842 * 4 3 2 6 6 C 1.40359 * 119.77181 * 359.97438 * 5 4 3 7 7 C 1.46315 * 120.21676 * 179.97438 * 6 5 4 8 8 C 1.38213 * 120.00015 * 0.02562 * 7 6 5 9 9 C 1.38795 * 120.00308 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99888 * 359.97438 * 9 8 7 11 11 C 1.40667 * 120.00207 * 179.97438 * 9 8 7 12 12 N 1.30526 * 119.99634 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99949 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47389 * 89.99865 * 13 11 9 15 15 H 1.48499 * 109.46920 * 210.00084 * 13 11 9 16 16 H 1.48503 * 109.47374 * 329.99738 * 13 11 9 17 17 C 1.37700 * 119.88938 * 179.79093 * 2 1 3 18 18 H 1.09000 * 109.46981 * 270.20711 * 1 2 3 19 19 H 1.08993 * 109.47107 * 30.20667 * 1 2 3 20 20 H 1.09001 * 109.47106 * 150.21266 * 1 2 3 21 21 H 1.08012 * 119.77905 * 0.02562 * 3 2 1 22 22 H 1.08005 * 119.89325 * 179.76949 * 4 3 2 23 23 H 1.08000 * 120.11752 * 179.97438 * 5 4 3 24 24 H 1.08002 * 120.00182 * 180.02562 * 7 6 5 25 25 H 1.08002 * 119.99278 * 359.97438 * 8 7 6 26 26 H 0.97003 * 120.00144 * 179.97438 * 12 11 9 27 27 H 1.08002 * 120.11618 * 0.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.2013 0.0000 4 6 3.5827 1.2146 -0.0054 5 6 4.2874 0.0311 -0.0064 6 6 3.5972 -1.1911 -0.0014 7 6 4.3360 -2.4540 -0.0031 8 6 5.7181 -2.4461 -0.0090 9 6 6.4189 -3.6441 -0.0110 10 1 5.8843 -4.5825 -0.0076 11 6 7.8256 -3.6361 -0.0176 12 7 8.4716 -2.5019 -0.0222 13 14 8.7688 -5.2484 -0.0211 14 1 9.0122 -5.6765 -1.4221 15 1 10.0685 -5.0630 0.6728 16 1 7.9755 -6.2876 0.6833 17 6 2.1932 -1.1938 0.0044 18 1 -0.3633 0.0037 1.0277 19 1 -0.3633 0.8881 -0.5170 20 1 -0.3633 -0.8919 -0.5105 21 1 1.6522 2.1336 0.0004 22 1 4.1119 2.1561 -0.0091 23 1 5.3673 0.0434 -0.0111 24 1 3.8013 -3.3924 0.0004 25 1 6.2526 -1.5077 -0.0128 26 1 9.4417 -2.4963 -0.0264 27 1 1.6533 -2.1292 0.0074 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084427199.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:07 Heat of formation + Delta-G solvation = 1.856632 kcal Electronic energy + Delta-G solvation = -10368.278820 eV Core-core repulsion = 8475.681759 eV Total energy + Delta-G solvation = -1892.597061 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 188.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.03636 -34.71394 -32.62387 -31.13227 -29.22230 -26.15189 -25.01063 -21.45979 -20.91255 -18.23841 -17.14523 -15.47933 -15.18328 -14.21153 -13.88397 -13.12664 -13.04603 -12.66206 -12.12968 -11.71545 -11.60772 -11.29417 -11.24621 -11.16061 -10.54851 -10.15124 -9.92824 -9.75008 -9.37935 -8.74950 -7.78464 -7.23457 -7.12443 -4.44911 2.20323 2.45327 2.84141 2.88307 2.93795 3.66254 3.69388 4.78859 5.40800 5.61621 5.66047 5.95996 6.04069 6.06638 6.27959 6.39893 6.56624 6.70508 6.76010 6.86188 7.15345 7.32819 7.51938 7.58676 7.63270 7.80643 8.07273 8.24680 8.34958 8.76614 8.88315 9.75988 Molecular weight = 188.09amu Principal moments of inertia in cm(-1) A = 0.084163 B = 0.007469 C = 0.006886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.608952 B = 3747.770309 C = 4065.230807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.071 4.071 3 C -0.212 4.212 4 C -0.094 4.094 5 C -0.193 4.193 6 C 0.062 3.938 7 C -0.410 4.410 8 C 0.078 3.922 9 C -0.419 4.419 10 H 0.081 0.919 11 C 0.068 3.932 12 N -0.780 5.780 13 Si 0.925 3.075 14 H -0.263 1.263 15 H -0.272 1.272 16 H -0.256 1.256 17 C -0.190 4.190 18 H 0.059 0.941 19 H 0.055 0.945 20 H 0.057 0.943 21 H 0.097 0.903 22 H 0.100 0.900 23 H 0.112 0.888 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.293 0.707 27 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.425 1.209 0.011 3.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.071 4.071 3 C -0.230 4.230 4 C -0.113 4.113 5 C -0.211 4.211 6 C 0.062 3.938 7 C -0.431 4.431 8 C 0.057 3.943 9 C -0.445 4.445 10 H 0.099 0.901 11 C -0.155 4.155 12 N -0.402 5.402 13 Si 0.748 3.252 14 H -0.188 1.188 15 H -0.197 1.197 16 H -0.179 1.179 17 C -0.208 4.208 18 H 0.078 0.922 19 H 0.074 0.926 20 H 0.076 0.924 21 H 0.116 0.884 22 H 0.119 0.881 23 H 0.130 0.870 24 H 0.101 0.899 25 H 0.111 0.889 26 H 0.104 0.896 27 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.156 1.319 0.010 3.421 hybrid contribution 0.553 -0.588 -0.001 0.807 sum -2.603 0.731 0.009 2.704 Atomic orbital electron populations 1.20706 0.92970 1.01485 1.01178 1.19555 0.94510 0.93602 0.99462 1.20475 0.93988 0.96055 1.12489 1.20765 0.94012 0.97085 0.99402 1.21207 0.99258 0.92036 1.08586 1.19074 0.92053 0.93486 0.89191 1.21076 0.93162 0.92816 1.36076 1.20755 0.92617 0.96611 0.84363 1.19853 0.90710 0.95940 1.38006 0.90055 1.26518 0.99118 0.98873 0.91034 1.69478 1.10981 1.28355 1.31404 0.86023 0.78603 0.80792 0.79819 1.18761 1.19686 1.17927 1.20881 0.93793 0.96038 1.10085 0.92213 0.92574 0.92388 0.88443 0.88137 0.87028 0.89906 0.88895 0.89624 0.87949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 10.00 36.01 0.36 -1.27 15 2 C -0.07 -1.41 5.87 -104.70 -0.61 -2.03 15 3 C -0.21 -4.16 9.70 -39.36 -0.38 -4.54 15 4 C -0.09 -1.95 10.02 -39.66 -0.40 -2.35 15 5 C -0.19 -4.50 9.43 -38.96 -0.37 -4.86 15 6 C 0.06 1.53 5.87 -105.04 -0.62 0.91 15 7 C -0.41 -10.69 9.69 -36.35 -0.35 -11.05 15 8 C 0.08 2.07 8.80 -39.38 -0.35 1.73 15 9 C -0.42 -10.76 9.03 -38.46 -0.35 -11.11 15 10 H 0.08 2.02 7.86 -52.49 -0.41 1.61 15 11 C 0.07 1.60 5.51 -17.19 -0.09 1.51 15 12 N -0.78 -18.98 12.85 55.59 0.71 -18.27 15 13 Si 0.92 17.40 29.57 -169.99 -5.03 12.37 15 14 H -0.26 -4.86 7.11 56.52 0.40 -4.46 15 15 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 16 H -0.26 -4.78 7.11 56.52 0.40 -4.38 15 17 C -0.19 -4.21 9.46 -38.97 -0.37 -4.58 15 18 H 0.06 0.84 8.14 -51.93 -0.42 0.41 15 19 H 0.06 0.76 8.08 -51.93 -0.42 0.34 15 20 H 0.06 0.83 8.08 -51.93 -0.42 0.41 15 21 H 0.10 1.65 8.06 -52.48 -0.42 1.23 15 22 H 0.10 1.79 8.06 -52.48 -0.42 1.37 15 23 H 0.11 2.63 6.18 -52.49 -0.32 2.30 15 24 H 0.08 2.14 8.06 -52.49 -0.42 1.72 15 25 H 0.09 2.53 5.47 -52.49 -0.29 2.24 15 26 H 0.29 6.32 8.29 -40.82 -0.34 5.98 15 27 H 0.10 2.14 8.06 -52.49 -0.42 1.71 15 LS Contribution 241.46 15.07 3.64 3.64 Total: -1.00 -26.64 241.46 -7.31 -33.95 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -3.11 Total: 5.95 kcal Atomic # 6 Polarization: -34.11 SS G_CDS: -3.53 Total: -37.64 kcal Atomic # 7 Polarization: -18.98 SS G_CDS: 0.71 Total: -18.27 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.37 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -26.64 -7.31 -33.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084427199.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.807 kcal (2) G-P(sol) polarization free energy of solvation -26.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds