Wall clock time and date at job start Mon Mar 30 2020 02:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38562 * 119.89251 * 2 1 4 4 C 1.38517 * 120.44295 * 180.25892 * 3 2 1 5 5 C 1.37744 * 120.22110 * 359.78842 * 4 3 2 6 6 C 1.40359 * 119.77181 * 359.97438 * 5 4 3 7 7 C 1.46315 * 120.21676 * 179.97438 * 6 5 4 8 8 C 1.38213 * 120.00015 * 0.02562 * 7 6 5 9 9 C 1.38795 * 120.00308 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99888 * 359.97438 * 9 8 7 11 11 C 1.40667 * 120.00207 * 179.97438 * 9 8 7 12 12 N 1.30526 * 119.99634 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99949 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47389 * 89.99865 * 13 11 9 15 15 H 1.48499 * 109.46920 * 210.00084 * 13 11 9 16 16 H 1.48503 * 109.47374 * 329.99738 * 13 11 9 17 17 C 1.37700 * 119.88938 * 179.79093 * 2 1 3 18 18 H 1.09000 * 109.46981 * 270.20711 * 1 2 3 19 19 H 1.08993 * 109.47107 * 30.20667 * 1 2 3 20 20 H 1.09001 * 109.47106 * 150.21266 * 1 2 3 21 21 H 1.08012 * 119.77905 * 0.02562 * 3 2 1 22 22 H 1.08005 * 119.89325 * 179.76949 * 4 3 2 23 23 H 1.08000 * 120.11752 * 179.97438 * 5 4 3 24 24 H 1.08002 * 120.00182 * 180.02562 * 7 6 5 25 25 H 1.08002 * 119.99278 * 359.97438 * 8 7 6 26 26 H 0.97003 * 120.00144 * 179.97438 * 12 11 9 27 27 H 1.08002 * 120.11618 * 0.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.2013 0.0000 4 6 3.5827 1.2146 -0.0054 5 6 4.2874 0.0311 -0.0064 6 6 3.5972 -1.1911 -0.0014 7 6 4.3360 -2.4540 -0.0031 8 6 5.7181 -2.4461 -0.0090 9 6 6.4189 -3.6441 -0.0110 10 1 5.8843 -4.5825 -0.0076 11 6 7.8256 -3.6361 -0.0176 12 7 8.4716 -2.5019 -0.0222 13 14 8.7688 -5.2484 -0.0211 14 1 9.0122 -5.6765 -1.4221 15 1 10.0685 -5.0630 0.6728 16 1 7.9755 -6.2876 0.6833 17 6 2.1932 -1.1938 0.0044 18 1 -0.3633 0.0037 1.0277 19 1 -0.3633 0.8881 -0.5170 20 1 -0.3633 -0.8919 -0.5105 21 1 1.6522 2.1336 0.0004 22 1 4.1119 2.1561 -0.0091 23 1 5.3673 0.0434 -0.0111 24 1 3.8013 -3.3924 0.0004 25 1 6.2526 -1.5077 -0.0128 26 1 9.4417 -2.4963 -0.0264 27 1 1.6533 -2.1292 0.0074 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084427199.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:07 Heat of formation + Delta-G solvation = -11.112041 kcal Electronic energy + Delta-G solvation = -10368.841184 eV Core-core repulsion = 8475.681759 eV Total energy + Delta-G solvation = -1893.159425 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 188.090 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.72804 -36.58111 -34.35501 -32.79307 -31.03824 -27.67675 -26.82410 -23.25559 -22.59596 -20.02646 -19.12081 -17.17937 -16.88047 -15.88388 -15.54074 -14.73583 -14.44726 -14.33996 -13.75713 -13.22988 -13.21299 -12.98523 -12.82478 -12.76957 -12.13688 -11.89467 -11.63286 -11.48290 -11.28694 -10.58028 -9.45135 -9.02916 -8.98623 -6.41256 0.44583 0.75075 1.31618 1.33122 1.50189 1.93611 2.09589 2.99245 3.50138 4.15632 4.20435 4.44325 4.52632 4.72831 4.79707 4.87774 4.90180 4.91054 5.05882 5.12598 5.44114 5.60102 5.66236 5.76959 5.92798 5.97778 6.23230 6.36580 6.49656 6.81564 6.90326 7.99895 Molecular weight = 188.09amu Principal moments of inertia in cm(-1) A = 0.084163 B = 0.007469 C = 0.006886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.608952 B = 3747.770309 C = 4065.230807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.072 4.072 3 C -0.200 4.200 4 C -0.096 4.096 5 C -0.215 4.215 6 C 0.030 3.970 7 C -0.433 4.433 8 C 0.058 3.942 9 C -0.451 4.451 10 H 0.081 0.919 11 C 0.028 3.972 12 N -0.811 5.811 13 Si 1.003 2.997 14 H -0.254 1.254 15 H -0.256 1.256 16 H -0.254 1.254 17 C -0.202 4.202 18 H 0.077 0.923 19 H 0.081 0.919 20 H 0.065 0.935 21 H 0.138 0.862 22 H 0.131 0.869 23 H 0.094 0.906 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.306 0.694 27 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.412 1.886 0.010 4.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.072 4.072 3 C -0.218 4.218 4 C -0.114 4.114 5 C -0.233 4.233 6 C 0.030 3.970 7 C -0.454 4.454 8 C 0.037 3.963 9 C -0.477 4.477 10 H 0.099 0.901 11 C -0.192 4.192 12 N -0.434 5.434 13 Si 0.821 3.179 14 H -0.178 1.178 15 H -0.180 1.180 16 H -0.178 1.178 17 C -0.220 4.220 18 H 0.096 0.904 19 H 0.100 0.900 20 H 0.084 0.916 21 H 0.156 0.844 22 H 0.149 0.851 23 H 0.112 0.888 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.117 0.883 27 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.162 2.024 0.009 4.629 hybrid contribution 0.698 -0.596 0.000 0.918 sum -3.465 1.428 0.009 3.747 Atomic orbital electron populations 1.20775 0.89215 1.03226 1.02833 1.20111 0.97304 0.92584 0.97186 1.21021 0.93641 0.97674 1.09437 1.21133 0.94997 0.97129 0.98178 1.21241 0.98780 0.93076 1.10223 1.19254 0.93462 0.93249 0.91043 1.21136 0.93210 0.93424 1.37665 1.20764 0.93009 0.96537 0.86032 1.20073 0.92371 0.95447 1.39847 0.90122 1.27496 0.99084 1.02938 0.89703 1.69502 1.12134 1.30582 1.31166 0.84884 0.77273 0.75442 0.80288 1.17776 1.17991 1.17794 1.21107 0.92936 0.97734 1.10268 0.90431 0.90049 0.91565 0.84431 0.85131 0.88761 0.90912 0.90503 0.88275 0.87437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.74 10.00 71.24 0.71 -2.02 15 2 C -0.07 -2.65 5.87 -19.91 -0.12 -2.77 15 3 C -0.20 -7.12 9.70 22.41 0.22 -6.91 15 4 C -0.10 -3.82 10.02 22.22 0.22 -3.60 15 5 C -0.21 -10.30 9.43 22.67 0.21 -10.08 15 6 C 0.03 1.54 5.87 -20.14 -0.12 1.42 15 7 C -0.43 -24.03 9.69 24.37 0.24 -23.79 15 8 C 0.06 3.29 8.80 22.40 0.20 3.49 15 9 C -0.45 -24.35 9.03 23.00 0.21 -24.15 15 10 H 0.08 4.21 7.86 -2.91 -0.02 4.19 15 11 C 0.03 1.35 5.51 85.48 0.47 1.82 15 12 N -0.81 -40.48 12.85 21.96 0.28 -40.19 15 13 Si 1.00 35.47 29.57 68.60 2.03 37.50 15 14 H -0.25 -8.56 7.11 99.48 0.71 -7.85 15 15 H -0.26 -8.34 7.11 99.48 0.71 -7.63 15 16 H -0.25 -8.87 7.11 99.48 0.71 -8.16 15 17 C -0.20 -8.94 9.46 22.67 0.21 -8.72 15 18 H 0.08 1.82 8.14 -2.39 -0.02 1.80 15 19 H 0.08 1.77 8.08 -2.39 -0.02 1.75 15 20 H 0.07 1.65 8.08 -2.39 -0.02 1.63 15 21 H 0.14 3.86 8.06 -2.90 -0.02 3.83 15 22 H 0.13 4.31 8.06 -2.91 -0.02 4.28 15 23 H 0.09 4.73 6.18 -2.91 -0.02 4.71 15 24 H 0.07 4.03 8.06 -2.91 -0.02 4.01 15 25 H 0.08 4.52 5.47 -2.91 -0.02 4.51 15 26 H 0.31 13.29 8.29 -92.71 -0.77 12.52 15 27 H 0.11 4.51 8.06 -2.91 -0.02 4.49 15 Total: -1.00 -59.85 241.46 5.91 -53.94 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 1.14 Total: 24.07 kcal Atomic # 6 Polarization: -77.77 SS G_CDS: 2.46 Total: -75.32 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.28 Total: -40.19 kcal Atomic # 14 Polarization: 35.47 SS G_CDS: 2.03 Total: 37.50 kcal Total: -59.85 5.91 -53.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084427199.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.825 kcal (2) G-P(sol) polarization free energy of solvation -59.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds